DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG12877 and Trex1

DIOPT Version :9

Sequence 1:NP_001034073.1 Gene:CG12877 / 43333 FlyBaseID:FBgn0039544 Length:991 Species:Drosophila melanogaster
Sequence 2:NP_001020160.1 Gene:Trex1 / 100049583 RGDID:1311998 Length:316 Species:Rattus norvegicus


Alignment Length:138 Identity:29/138 - (21%)
Similarity:47/138 - (34%) Gaps:45/138 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 LPSTGLFKGFLCPYFDGQDAASCKRPFCHFKHARKDELEAAPPAEPSPVPKYKPAPKLLSLPLPQ 66
            |.:|||      ||...:....|.  ....:||.  |..:....:|.||||   .|:::.    :
  Rat    19 LEATGL------PYSQPKITELCL--LAVHRHAL--ENSSMSEGQPPPVPK---PPRVVD----K 66

  Fly    67 ITLCAPRKKSNLEYHPEKP--------------ALDASPAKKKQEASVDSAPKYVPGQPS----- 112
            ::||..         |.||              .|:|...::..:........::..||.     
  Rat    67 LSLCIA---------PGKPCSSGASEITGLTTAGLEAHGRQRFNDNLATLLQVFLQRQPQPCCLV 122

  Fly   113 VTNGEEYD 120
            ..||:.||
  Rat   123 AHNGDRYD 130

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG12877NP_001034073.1 CDC45 129..>199 CDD:280821
EloA-BP1 572..736 CDD:292495
REX1_like 834..983 CDD:99848
DnaQ 847..>991 CDD:223916
Trex1NP_001020160.1 TREX1_2 14..211 CDD:99839 29/138 (21%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0847
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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