DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CROT and crata

DIOPT Version :9

Sequence 1:NP_001334704.1 Gene:CROT / 43332 FlyBaseID:FBgn0039543 Length:618 Species:Drosophila melanogaster
Sequence 2:NP_001027489.1 Gene:crata / 613081 XenbaseID:XB-GENE-996699 Length:625 Species:Xenopus tropicalis


Alignment Length:625 Identity:167/625 - (26%)
Similarity:308/625 - (49%) Gaps:59/625 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly    21 ETLPSLPLPELRDTMERYYSCIQPFGTKEELAQARKTIDEFQ-NGVGAQLHEQLKKRAAGMRNWL 84
            |.||.||:|.|:.|:::|...::|..:.||.:..|..:::|: :|||.:|.:.|::||....|||
 Frog    33 EGLPCLPVPPLQQTLDKYLLALKPLVSLEEWSLTRVLVEDFRTSGVGERLQKGLERRARKTENWL 97

  Fly    85 GTWWEDYGYHLIRMPLLPYQL--MVMPSQLEMVGVPETPEYMLKSLARHIHHSLEFWDLTRKSSI 147
            ..||....|...|||::.:..  :|:|.|     ..|..:..|:..|:.|...|:|..:....::
 Frog    98 SEWWLQTAYLEYRMPVVVHSNPGVVLPKQ-----DFEDRQGQLRFAAKLIEGVLDFKTMVDNETL 157

  Fly   148 KPLSSNGGKIKYSSALYKHFFSTCRVPGEEQDHIEKHFLTKDEGKTPSHMLISGKGRQFIFDCVH 212
             |:...|||....:..|: ..|:||:||.::|.:..:   ....|.|:|:.:....:.|..|..:
 Frog   158 -PVEYLGGKPLCMNQYYQ-MLSSCRIPGPKRDTVANY---SQASKPPTHITVVHNFQFFELDVYN 217

  Fly   213 EDDTILSAPEILVALQRVRSI---LDYEPLGDCVPTLSHDERSTWARNRNRLREISVANKETLLL 274
            .|.|.|::.:|...|:::...   .:.||:|  :.|.:|  |::||:..|.|.: ...|||::..
 Frog   218 SDGTPLTSDQIFTQLEKIWGTSLQTNKEPIG--ILTTNH--RNSWAKAYNNLIK-DKTNKESVRT 277

  Fly   275 VESACMEICWYEQSPKDYEESCQLGLYGD-LH---------SRWADRSSSIIAFRNGRCNWTGEH 329
            ::.:...:|.....|:..::..|..:... ||         :||.|::...|...:|.|....||
 Frog   278 IQKSIFTVCLDAPIPRVSDDLYQSQVAAQMLHGGGSRWNSGNRWFDKTLQFIVAEDGSCGLVYEH 342

  Fly   330 SCYDGTVSIS-------YATFMQL---SFLEVPEPDWAEAEKGNVLEVKELHFQLDDTLKNEIKR 384
            :..:|...::       |....:|   ..:.:|.|             |:|.|.:...:||:|::
 Frog   343 APAEGPPIVALIDHVVEYTKRPELIRSPMMPLPMP-------------KKLRFNITPEIKNDIEK 394

  Fly   385 VQKDIDDRGIDVTVTFTAFDDYGKDFMKTHRLHPDSFVQVVMQWAYYQMHKEIAPTYETALMRQY 449
            .:::::....|:.|....|..:||:|.|:.:|.||:|:|:.:|.:||:|:|::..|||:|.:|.:
 Frog   395 AKQNLNIMVHDLDVKVFVFSVFGKNFPKSEKLSPDAFIQLALQLSYYRMYKQVCATYESASLRMF 459

  Fly   450 YNGRTETLRSCTSAVAEFLRASSNKQVGDMSLARAFRRAVDEHKHFMNEARKGHGIDRHLFGLWC 514
            ..|||:|:||.:.....|::|..:....:.......|:||..|:.:.:.|..|:.|||||.||..
 Frog   460 RLGRTDTIRSASIDSENFVQAMDDPSKQNQEKVDLLRKAVQAHRAYTDMAINGNAIDRHLLGLKL 524

  Fly   515 AAYESKMDIPAFYDDPMYTKSGGGGNFVLSSSTL-GFTANVGFVAPMVFDGYGVFYSITSEAVFI 578
            .|.|..:.:|..:.|..|..:   .:|.||:|.: ..|..|....|:|.|||||.|:...:.:..
 Frog   525 QAIEDLVSMPELFMDTSYAVA---MHFNLSTSQVPAKTDCVMCFGPVVPDGYGVCYNPMEDHINF 586

  Fly   579 NTTAYRDSLKTSARKFNDIFKDSFRRISVLLEQLAKESKL 618
            ..:|:....:|:|.:.....:.:...:..|:::..| |||
 Frog   587 AVSAFNSCAETNAARLAHYLERALCDMQQLVQRTPK-SKL 625

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CROTNP_001334704.1 None
crataNP_001027489.1 Carn_acyltransf 35..614 CDD:376382 161/609 (26%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D167256at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.010

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