DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CROT and crata

DIOPT Version :9

Sequence 1:NP_001334704.1 Gene:CROT / 43332 FlyBaseID:FBgn0039543 Length:618 Species:Drosophila melanogaster
Sequence 2:NP_001005587.1 Gene:crata / 449545 ZFINID:ZDB-GENE-040927-17 Length:631 Species:Danio rerio


Alignment Length:622 Identity:168/622 - (27%)
Similarity:302/622 - (48%) Gaps:65/622 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly    21 ETLPSLPLPELRDTMERYYSCIQPFGTKEELAQARKTIDEFQ--NGVGAQLHEQLKKRAAGMRNW 83
            |.||.||:|.|:.|.:||.:.:.|....|||...||.:::||  .|||.:|.:.|:.|||.:.||
Zfish    38 EGLPKLPVPPLKQTCDRYLAALDPIVDPEELNHTRKLLEDFQKPGGVGERLQKGLESRAAKLNNW 102

  Fly    84 LGTWWEDYGYHLIRMPLLPYQL--MVMPSQLEMVGVPETPEYMLKSLARHIHHSLEFWDLTRKSS 146
            |..||....|...|||::.:..  :|:| ::|.    ...:..::..|:.|...|:|..:....:
Zfish   103 LSDWWLQTAYLDYRMPVVVHSSPGVVLP-RMEF----SDRQGQMRYAAKLIAGVLDFKSMIDNET 162

  Fly   147 IKPLSSNGGKIKYSSALYKHFFSTCRVPGEEQDHIEKHFLTKDEGKTPSHMLISGKGRQFIFDCV 211
            : ||...||| ......|....|:||:||.::|.:..:.:.|   :..:|:.:....:.|:.|..
Zfish   163 L-PLEYLGGK-PLCMHQYYQVLSSCRIPGTKRDTVVNYAMDK---RPSTHITVVHNFQFFVLDVY 222

  Fly   212 HEDDTILSAPEILVALQRV-RSIL--DYEPLGDCVPTLSHDERSTWARNRNRLREISVANKETLL 273
            :.|.|.|:..:|.:.|::: .|.|  :.||:|    .|:.:.|::|.:..|.|.: ...|||::.
Zfish   223 NSDGTPLTVDQIYIQLEKIWNSSLQTNKEPIG----ILTSNHRNSWGKAYNNLIK-DKTNKESVR 282

  Fly   274 LVESACMEICWYEQSPKDYEE------SCQLGLYG-----DLHSRWADRSSSIIAFRNGRCNWTG 327
            .::.:...:|.....|:..::      ..|: |:|     :..:||.|::...|...:|.|....
Zfish   283 AIQKSIFTVCLDAPMPRASDDMYRTRAGVQM-LHGGGSRWNSGNRWFDKTLQFIIGEDGTCGLIY 346

  Fly   328 EHSCYDGTVSIS----YATFMQLSF--------LEVPEPDWAEAEKGNVLEVKELHFQLDDTLKN 380
            ||:..:|...:|    ...:|:.|.        |.:|:               :|.|.:...:|.
Zfish   347 EHAPAEGPPIVSILDHVVEYMKKSEMVRTPMVPLRMPQ---------------KLRFNITPEIKK 396

  Fly   381 EIKRVQKDIDDRGIDVTVTFTAFDDYGKDFMKTHRLHPDSFVQVVMQWAYYQMHKEIAPTYETAL 445
            :|:..:::::....|:.:....|..:||:|.|:.::.||:|:|:.:|.|||:::|...||||:|.
Zfish   397 DIEDAKQNMNIMVHDLDLRVNVFTHFGKNFPKSQKMSPDAFIQMALQLAYYRIYKRCCPTYESAS 461

  Fly   446 MRQYYNGRTETLRSCTSAVAEFLRASSNKQVGDMSLARAFRRAVDEHKHFMNEARKGHGIDRHLF 510
            :|.:..|||:|:||.:|..|.|::|..:....:........:||..|:.:.:.|.:|..|||||.
Zfish   462 LRMFRLGRTDTIRSASSDSASFVKAMDDPVKHNTEKVALLDKAVKAHRSYTDMAIRGQAIDRHLL 526

  Fly   511 GLWCAAYESKMDIPAFYDDPMYTKSGGGGNFVLSSSTL-GFTANVGFVAPMVFDGYGVFYSITSE 574
            ||...|.|....:|..:.|..|..:   .::.||:|.: ..|..|....|:|.|||||.|:....
Zfish   527 GLKLQAIEDLAALPEIFMDTSYAVA---LHYNLSTSQVPAKTDCVMCFGPVVPDGYGVCYNPMDT 588

  Fly   575 AVFINTTAYRDSLKTSARKFNDIFKDSFRRISVLLEQ 611
            .:....:|:.....|:|.:.....:|:...:..||||
Zfish   589 HINFAVSAFNSCQDTNAVRLAQGLEDALLDMRTLLEQ 625

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CROTNP_001334704.1 None
crataNP_001005587.1 Carn_acyltransf 40..620 CDD:279140 163/613 (27%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D167256at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.920

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