DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CROT and crat

DIOPT Version :9

Sequence 1:NP_001334704.1 Gene:CROT / 43332 FlyBaseID:FBgn0039543 Length:618 Species:Drosophila melanogaster
Sequence 2:XP_017951675.2 Gene:crat / 394811 XenbaseID:XB-GENE-487012 Length:667 Species:Xenopus tropicalis


Alignment Length:653 Identity:159/653 - (24%)
Similarity:277/653 - (42%) Gaps:134/653 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly    24 PSLPLPELRDTMERYYSCIQPFGTKEELAQARKTIDEF--QNGVGAQLHEQLKKRAAGMRNWLGT 86
            |..|:|:|..|:.||...:||..:|:||...|:.::||  ..|.|.:|.:||:|||....|||..
 Frog    74 PHQPVPDLSKTLFRYLGSLQPLVSKDELESTRELVEEFLRPGGQGEELAKQLQKRAERTDNWLTD 138

  Fly    87 WWEDYGYHLIRMPL----LPYQLMVMPSQLEMVGVPETPEYMLKSLARHIHHSLEFWDLTRKSSI 147
            |.....|....:||    .|..|:......:..|       .|:..::.|...|:|     |:.|
 Frog   139 WRHQAIYLENHLPLPVHSSPAVLLPQRDHKDWRG-------QLRFASKLISGVLDF-----KAKI 191

  Fly   148 ------------KPLSSNGGKIKYSSALYKHFFSTCRVPGEEQDHIEKHFLTKDEGKTPSHMLIS 200
                        :||..:         .|..||.:||.||.::|.:    |.:...|:.|..:..
 Frog   192 ESPDGLTEIWRGRPLCPH---------QYHDFFGSCREPGYKRDRV----LLQPAHKSLSQYVTV 243

  Fly   201 GKGRQFI-FDCVHEDDTILSAPEI---LVALQRVRSILDYEPLGDCVPTLSHDERSTWARN---- 257
            .:..||. .|..:.|.:.|:..:|   ::.|:......|.||:|    .|:.|.|::|.|.    
 Frog   244 CRNYQFFQMDVYNSDGSPLTEDQIHQQMLFLRAHSYKTDKEPVG----VLTTDHRNSWGRAYTTL 304

  Fly   258 -RNRLREISVANKETLLLVESACMEICWYEQSPKDYEE------SCQL----GLYGDLHSRWADR 311
             |:||      |:|::..::.:...:|....:.|..||      :.|:    |.:.:..:||.|:
 Frog   305 IRDRL------NRESVRSIQRSLFTVCLDATALKYSEELYSSRTAAQMLHGGGTHANSGNRWFDK 363

  Fly   312 SSSIIAFRNGRCNWTGEHSCYDGTVSISYATFMQLSFLEVPEPDWAEAEKGNVLEV--------- 367
            :...:...:|.|.     ..||...:.:.|....|               |:|||.         
 Frog   364 TLQFVVGEDGTCG-----LIYDQATADASAILTML---------------GHVLEYCSRGPKRLP 408

  Fly   368 -----------KELHFQLDDTLKNEIKRVQKDIDDRGIDVTVTFTAFDDYGKDFMKTHRLHPDSF 421
                       |:|:|......|..|:..::::|....|:.:....|.|:||.|.|.|.:.|.:|
 Frog   409 PRTPLTRLPPPKKLYFNFPPETKQHIENAKQNLDILVNDLDICCFTFSDFGKSFPKKHNMRPGAF 473

  Fly   422 VQVVMQWAYYQMHKEIAPTYETALMRQYYNGRTETLRSCTSAVAEFLRASS--NKQVGD-MSLAR 483
            :||.:|.|||:.|:.:..|.|...:|.::.||::.:|..:|...||::|:.  |:..|: :||  
 Frog   474 LQVALQLAYYRCHESLCATCEVVSLRTFHRGRSDVVRCSSSEALEFVQAADEPNRLAGEKLSL-- 536

  Fly   484 AFRRAVDEHKHFMNEARKGHGIDRHLFGLWCAAYESKMDIPAFYDDPMYTKSGGGGNFVLSSSTL 548
             .::||:.|:....:..:|..:|..|..|......|...:||...|..|         .:||...
 Frog   537 -LKKAVESHQCATEQVLQGQSVDGTLLALKMLCISSGAALPAILMDTSY---------AVSSHWK 591

  Fly   549 GFTANVG-------FVAPMVFDGYGVFYSITSEAVFINTTAYRDSLKTSARKFNDIFKDSFRRIS 606
            .||..|.       ...|:|.|||.|.::.:.:::.:..:|:....:|.|:|.:|..:.:.|.:.
 Frog   592 LFTGQVSSPIDCVMCYGPLVPDGYSVCFAPSLDSITVCVSAFDCCQETDAQKLSDSLQGALRDMQ 656

  Fly   607 VLL 609
            .|:
 Frog   657 SLI 659

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CROTNP_001334704.1 None
cratXP_017951675.2 Carn_acyltransf 74..656 CDD:395612 158/648 (24%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D167256at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.010

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