DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CROT and cpt-4

DIOPT Version :9

Sequence 1:NP_001334704.1 Gene:CROT / 43332 FlyBaseID:FBgn0039543 Length:618 Species:Drosophila melanogaster
Sequence 2:NP_504348.1 Gene:cpt-4 / 178889 WormBaseID:WBGene00019644 Length:748 Species:Caenorhabditis elegans


Alignment Length:640 Identity:155/640 - (24%)
Similarity:279/640 - (43%) Gaps:90/640 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly    20 DETLPSLPLPELRDTMERYYSCIQPFGTKEELAQARKTIDEFQNGVGAQLHEQLKKRAAGMRNWL 84
            |..||:||||.|:||::||...::...::|:..|..:...:|.:..|..:............|::
 Worm   138 DRLLPNLPLPALQDTVDRYVDSMKHLMSEEDYDQLLEMSRKFVSNEGRSIQRYAWFLHKFTDNYV 202

  Fly    85 GTWWEDYGYHLIRMPLLPYQLMVMPSQLEMVGVPETPEYMLKSLARHIH-HSLEFWDLTRKSSIK 148
            .:.||.|.|...|.|||   :....:|..|.|  |:.......:||.|: .::....|.|:   |
 Worm   203 TSLWEQYIYMAGRYPLL---INSSVAQCTMYG--ESDLIQAYQVARLIYIETIANLALDRQ---K 259

  Fly   149 PLSSNGGKIKYSSALYKHFFSTCRVPGEEQDHIEKHFLTKDEGKTPSHMLISGKGRQFIFDCVHE 213
            .::...|.:  |:..|::.::.||:||::.|..:.:       |...|:::       :.||...
 Worm   260 YMAIGEGLM--STRHYRNIYNGCRIPGKQYDSFQWN-------KPAKHVIL-------VHDCTWY 308

  Fly   214 DDTILSAPEILVALQRVRSILDYEPLG---------DCVPTLSHDERSTWARNRNRLREISVANK 269
            ...|..:...|..:.::..|: .|.:|         ..:.:|:.|.|:.|..||.:....:..|:
 Worm   309 KVDICDSNGQLYTVDQLAKIV-AEVMGRDDKSKGYLRNIASLTTDRRTEWCSNRQKFFLENKHNQ 372

  Fly   270 ETLLLVESACM------EICWYEQSPKDYEESCQLGLYGDLHSRWADRSSSIIAFRNGRCNWTGE 328
            :.|..:|:|..      ::.|..::.:...:..:..|.|...:||.|::.:.....:||...|||
 Worm   373 KLLQQIETAQFVMSVDGDLNWGVETTEQLSKYMKDMLAGSGSNRWVDKTMNYAVDASGRAGATGE 437

  Fly   329 HSCYDGT---------------VSISYATFMQLSFLEVPEPDWAEAEKGNVLEVKELHFQLDDTL 378
            ||..||.               |.:|.:|..||..:::     ...||.::...::|.||..|.:
 Worm   438 HSPCDGAELDHLCENVLNVDKQVLVSPSTEEQLEIIKM-----TFTEKNSLRLAQKLDFQEVDGM 497

  Fly   379 KNEIKRVQKDIDDRGIDVTVTFTAFDDYGKDFMKTHRLHPDSFVQVVMQWAYYQMHKEIAPTYET 443
            :.|:.|..:.......|:.:...||.|:||..:|...:.||.|:|:.:|.|.|....:...|||.
 Worm   498 ETEVNRCFEQHHKASDDLHMHSIAFTDFGKGRVKKCGISPDGFLQMAIQLANYYDQGKFVLTYEP 562

  Fly   444 ALMRQYYNGRTETLRSCTSAVAEFLRA-----SSNKQVGDMSLARAFRRAVDEHKHFMNEARKGH 503
            ..:|.|.|.||||||..|....:|::|     |:.|:..|:     .::|.:.|.....|...|.
 Worm   563 GSVRFYANSRTETLRPVTDYSCKFVQAMLSDESTQKERRDL-----LKKACEAHVENCKEVMTGK 622

  Fly   504 GIDRHLFGLWCAA------------YESKMDIPAFYDDPMYTKSGGGGNFVLSSSTLGFTANVGF 556
            |:|||||.|...|            |.::..:.:..:.|..|.|....   :|...:...|:.|.
 Worm   623 GVDRHLFVLCVLAKGLGYSSPFLEEYANQKWLLSTSNIPNMTNSVDED---ISEDNIMLGASFGA 684

  Fly   557 VAPMVFDGYGVFYSIT-SEAVFINTTAYRDSLKTSARKFNDIFKDSFRRISVLLE 610
            ||.   ||||:.|... :.|:.::.|:|..|..|.:.:|....:::...::.|.:
 Worm   685 VAQ---DGYGICYRFAGNRAIMVHITSYHSSPATDSDRFGQHLREAIHTLADLFD 736

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CROTNP_001334704.1 None
cpt-4NP_504348.1 Carn_acyltransf 150..731 CDD:376382 146/621 (24%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D559299at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.920

Return to query results.
Submit another query.