DRSC/TRiP Functional Genomics Resources

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Protein Alignment CROT and cpt-1

DIOPT Version :9

Sequence 1:NP_001334704.1 Gene:CROT / 43332 FlyBaseID:FBgn0039543 Length:618 Species:Drosophila melanogaster
Sequence 2:NP_496721.2 Gene:cpt-1 / 174912 WormBaseID:WBGene00012907 Length:779 Species:Caenorhabditis elegans


Alignment Length:648 Identity:174/648 - (26%)
Similarity:294/648 - (45%) Gaps:61/648 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 LYFMSKDDKNTFDFDETLPSLPLPELRDTMERYYSCIQPFGTKEELAQARKTIDEFQNGVGAQLH 70
            |:.:||.......|...||.||||.|.||:.::...::|..:.||..:.....:.|:.|||.:|.
 Worm   155 LHIISKAGPMLHSFQGALPRLPLPNLDDTVRKHLLSMKPILSDEEFQELEFLSERFRKGVGRRLQ 219

  Fly    71 EQLKKRAAGMRNWLGTWWEDYGYHLIRMPLLPYQLMVMPSQLEMVGVPETPEYMLKSLARHI-HH 134
            ..|..::....|::..|||::.|...|.|     :|:..:......:.|.|.....|.|.:: :.
 Worm   220 RYLTLKSWFSSNYVTDWWEEFVYMRQRSP-----IMINSNYYGFDTLNEHPTQNQASRAANLTYT 279

  Fly   135 SLEFWDLTRKSSIKPLS-SNGGKIKYSSALYKHFFSTCRVPGEEQDHIEKHFLTKDEGKTPSHML 198
            ||:|..:..:..:.|.| |...|:.:.:..|:..|:||||||||.|.:    |..|:.|   |:.
 Worm   280 SLQFRRMVDRQEVSPFSISPRTKVPFCTMQYERLFNTCRVPGEEVDRL----LHWDDAK---HIA 337

  Fly   199 ISGKGRQFIFDCVHEDDTILSAPEILVALQRVRSILDYEPLGDC-VPTLSHDERSTWARNRNRLR 262
            :..:|..|.. .||....:|.|.|:.|....:.:.......|:. :.:|:..||:.||:.| |..
 Worm   338 VYCRGVWFKL-IVHNGKRLLEACELQVQYDAILAHTHEPSEGEMHLASLTAGERADWAKTR-RAH 400

  Fly   263 EISVANKETLLLVESACM-------EICWYEQSPKDYEESCQLGLYGDLHSRWADRSSSIIAFRN 320
            ..|..||.:|..:|.|..       |..:..|.|...:......|:|..|.||.|:|.::|..:|
 Worm   401 FRSGVNKTSLNDIERAAFVVILDDEETHYDPQDPSKLDHWAHNLLHGKAHDRWFDKSFNLIISKN 465

  Fly   321 GRCNWTGEHSCYDGTVSISYATFMQLS---FLEVPEPDWAEAEKGNVLEVKELHFQLDDTLKNEI 382
            |......|||..|..|...:..:..|.   |:...|....:.|....|..:.|.:::.....::|
 Worm   466 GHVGINTEHSWGDAAVMAHFTEWSLLQDIVFIGYDENGRCKGEPKEKLTPERLKWEIPAPALDQI 530

  Fly   383 KRVQKDIDDRGIDVTVTFTAFDDYGKDFMKTHRLHPDSFVQVVMQWAYYQMHKEIAPTYETALMR 447
            ::..:..:....||.::...:.||||.|.|..::.||:|:|:.:|:.|::...:.:.|||.::.|
 Worm   531 RKSMEVANALIADVEMSLLVWTDYGKGFAKKLKVSPDAFLQMTLQYTYFKNQNKFSLTYEASMTR 595

  Fly   448 QYYNGRTETLRSCTSAVAEFLRASSNKQVGDMSLARAFRRAVDEHKHFMNEARKGHGIDRHLFGL 512
            .:..|||||:||||...::|:|:..:.........:..|:|.|:|:....:|..|.|:|||||.|
 Worm   596 LFREGRTETVRSCTVQSSDFVRSMLDASKTPQDRLQLLRKACDKHQELYRDAMCGQGVDRHLFAL 660

  Fly   513 WCAAYESKMDIPAFYDD---PMYTKSGGGGNFVLSSSTLG-------------------FTANVG 555
            :......:.:.| |:|:   |.|         :||:|...                   .||..|
 Worm   661 YVIKRYLEEESP-FFDNIFPPTY---------LLSTSQTPMNQCEADAKGLSNEVRLRLITAGGG 715

  Fly   556 FVAPMVFDGYGVFYSITSE-AVFINTTAYRDSLKTSARKFNDIFKDSFRRISVLLEQLAKESK 617
            | .|:...||||.|.:..| .:..:.::.|.:..||:|:|.:..|.|...:..|.|.:....|
 Worm   716 F-GPVADRGYGVSYIVAGEDTLSFHISSKRSADNTSSREFREELKRSLNDMKKLAEAIEAPKK 777

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CROTNP_001334704.1 None
cpt-1NP_496721.2 CPT_N 1..46 CDD:293093
Carn_acyltransf 172..766 CDD:279140 167/618 (27%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D559299at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.920

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