DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CROT and Cpt1a

DIOPT Version :9

Sequence 1:NP_001334704.1 Gene:CROT / 43332 FlyBaseID:FBgn0039543 Length:618 Species:Drosophila melanogaster
Sequence 2:XP_011246904.1 Gene:Cpt1a / 12894 MGIID:1098296 Length:798 Species:Mus musculus


Alignment Length:664 Identity:172/664 - (25%)
Similarity:278/664 - (41%) Gaps:118/664 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    17 FDFDETLPSLPLPELRDTMERYYSCIQPFGTKEELAQARKTIDEFQNGVGAQLHEQLKKRAAGMR 81
            :.|..:||.||:|.::||:.||...::|...:.:..:......:|...:|.:|...||.::....
Mouse   190 YSFQTSLPRLPVPAVKDTVSRYLESVRPLMKEGDFQRMTALAQDFAVNLGPKLQWYLKLKSWWAT 254

  Fly    82 NWLGTWWEDYGYHLIRMPLLPYQLMVMPSQLEMVGVPETPEYMLKSLARHIHHSLEFWDLT-RKS 145
            |::..|||:|.|...|.|     :||..:...|..:..||.::..:.|.:..|::..:..| .:.
Mouse   255 NYVSDWWEEYIYLRGRGP-----IMVNSNYYAMEMLYITPTHIQAARAGNTIHAILLYRRTVDRE 314

  Fly   146 SIKPLSSNGGKIKYSSALYKHFFSTCRVPGEEQDHIEKHFLTKDEGKTPSHMLISGKGRQFIFDC 210
            .:||:...|..|...||.::..|:|.|:||||.|.|: |.      |...|:::..:||.|....
Mouse   315 ELKPIRLLGSTIPLCSAQWERLFNTSRIPGEETDTIQ-HV------KDSRHIVVYHRGRYFKVWL 372

  Fly   211 VHEDDTILSAPEILVALQRVRSILD--YEPL-GDC-VPTLSHDERSTWARNRNRLREISVA---N 268
            .| |..:|...|:   .|:::.|||  .||. |:. :..|:..:|..||    :.|:...|   |
Mouse   373 YH-DGRLLRPREL---EQQMQQILDDTSEPQPGEAKLAALTAADRVPWA----KCRQTYFARGKN 429

  Fly   269 KETLLLVESACM-------EICWYEQSPK----DYEESCQLGLYGDLHSRWADRSSSIIAFRNGR 322
            |::|..||.|..       |..:.|:.|:    .|.:|.   |:|....||.|:|.:.:.|:|.:
Mouse   430 KQSLDAVEKAAFFVTLDESEQGYREEDPEASIDSYAKSL---LHGRCFDRWFDKSITFVVFKNSK 491

  Fly   323 CNWTGEHSCYDGTV------SISYATFMQLSFLE-----------VPEPDWAEAE-KGNVLEVKE 369
            .....|||..|..:      .:......||.:.|           :|:|...:.: .|...||.|
Mouse   492 IGINAEHSWADAPIVGHLWEYVMATDVFQLGYSEDGHCKGDKNPNIPKPTRLQWDIPGECQEVIE 556

  Fly   370 LHFQLDDTLKNEIKRVQKDIDDRGIDVTVTFTAFDDYGKDFMKTHRLHPDSFVQVVMQWAYYQMH 434
            ........|.|              ||.:....||.:||..:|..|..||:|:|:.:|.|:|:..
Mouse   557 TSLSSASFLAN--------------DVDLHSFPFDTFGKGLIKKCRTSPDAFIQLALQLAHYKDM 607

  Fly   435 KEIAPTYETALMRQYYNGRTETLRSCTSAVAEFLRASSNKQVGDMSLARAFRRAVDEHKHFMNEA 499
            .:...|||.::.|.:..|||||:||||:....|:.|..:.........:.|:.|.::|:|....|
Mouse   608 GKFCLTYEASMTRLFREGRTETVRSCTTESCNFVLAMMDPTTTAEQRFKLFKIACEKHQHLYRLA 672

  Fly   500 RKGHGIDRHLFGLWCAAYESKMDIP-------------------------AFYDDPMYTKSGGGG 539
            ..|.|||||||.|:..:....:|.|                         .|...|.|...||| 
Mouse   673 MTGAGIDRHLFCLYVVSKYLAVDSPFLKEVLSEPWRLSTSQTPQQQVELFDFEKYPDYVSCGGG- 736

  Fly   540 NFVLSSSTLGFTANVGFVAPMVFDGYGVFYSITSE-AVFINTTAYRDSLKTSARKFNDIFKDSFR 603
                             ..|:..|||||.|.|..| .:..:.::...|.:|.:.:|....:.:..
Mouse   737 -----------------FGPVADDGYGVSYIIVGENFIHFHISSKFSSPETDSHRFGKHLRQAMM 784

  Fly   604 RISVLLEQLAKESK 617
            .|..|....|...|
Mouse   785 DIITLFGLTANSKK 798

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CROTNP_001334704.1 None
Cpt1aXP_011246904.1 CPT_N 26..71 CDD:374569
Carn_acyltransf 196..786 CDD:376382 167/644 (26%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D559299at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.920

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