DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CROT and chat

DIOPT Version :9

Sequence 1:NP_001334704.1 Gene:CROT / 43332 FlyBaseID:FBgn0039543 Length:618 Species:Drosophila melanogaster
Sequence 2:XP_002933959.1 Gene:chat / 100485221 XenbaseID:XB-GENE-984174 Length:636 Species:Xenopus tropicalis


Alignment Length:626 Identity:161/626 - (25%)
Similarity:280/626 - (44%) Gaps:89/626 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly    23 LPSLPLPELRDTMERYYSCIQPFGTKEELAQARKTIDEFQ--NGVGAQLHEQLKKRAAGMRNWLG 85
            ||.||:|.|:.||:.|..|::...|:|:..:::..:|.|.  .|.|..|.|:|.:|...|.||:.
 Frog    23 LPKLPVPPLKQTMDTYLKCMKHLVTEEQYQKSKAVVDAFMMPGGEGETLQEKLLERREKMENWIH 87

  Fly    86 TWWEDYGYHLIRMPLLPYQLMVMPSQLEMVGVPETPEYMLKSLARH----IHHSLEF-------- 138
            .:|.|..|...|:||               .|..:|..:   .|||    .:..|.|        
 Frog    88 LYWLDDMYLNNRLPL---------------PVNSSPAVI---FARHNFRDTNDQLRFAANLISGV 134

  Fly   139 --WDLTRKSSIKPLSSNGGKIKYSSALYKHF---FSTCRVPGEEQDHI---EKHFLTKDEGKTPS 195
              :.....|...|:....|::.......|.:   ||:.|:||..:|.:   |...:.:     |.
 Frog   135 LDYKTMLDSQALPVDFARGQLSGQPMCMKQYYGLFSSYRLPGTIKDTLVAQESTIMPE-----PE 194

  Fly   196 HMLISGKGRQFIFDCVHEDDTILSAPEILVALQRVRSILDYE-----PLGDCVPTLSHDERSTWA 255
            |::::...:.|:.|.| .:...||..::...|.::..:...|     |:|    .|:.|.|:.||
 Frog   195 HIIVACNNQFFVLDVV-INFRRLSEGDLFTQLCKIDRMAKNEEEMLPPIG----LLTSDGRAEWA 254

  Fly   256 RNRNRLREISVANKETLLLVESACMEICWYEQSPK----DYEESCQL----GLYGDLHSRWADRS 312
            ..|..|.:.| .|:::|.::| .||.|...:...|    |...:.||    |:..:..:||.|:.
 Frog   255 HARETLMKDS-TNRDSLDMIE-RCMCIVCLDAPTKMELNDTNRALQLLHGGGIGRNGGNRWYDKP 317

  Fly   313 SSIIAFRNGRCNWTGEHSCYDGTVSISYATFMQLSFLEVPEPDWAEAEKGNVLEV-KELHFQLDD 376
            ...:...:|.|....|||.:||.|.:. .|...|.:::........|:..:.|.. :.|.::...
 Frog   318 MQFVVGSDGVCGTICEHSPFDGIVLVQ-CTEHLLKYMKNSPKKLVRADSVSELPAPRRLRWKCSP 381

  Fly   377 TLK-------NEIKRVQKDIDDRGIDVTVTFTAFDDYGKDFMKTHRLHPDSFVQVVMQWAYYQMH 434
            .::       |:::|:..::|       .....|.:|||:|:|..|:.||:|:||.:|.|:|:.|
 Frog   382 EIQGHLASSANKLQRIVNNLD-------FIVYKFKNYGKEFIKKQRMSPDAFIQVALQLAFYRCH 439

  Fly   435 KEIAPTYETALMRQYYNGRTETLRSCTSAVAEFLRA--SSNKQVGDMSLARAFRRAVDEHKHFMN 497
            :::.||||:|.:|::..||.:.:||.|:....|:.|  .....|.::......|.|:.....:..
 Frog   440 RKLVPTYESASIRRFQMGRVDNIRSSTAEALAFVNAMVDGETTVTNIEKMEYLRAAIKSQTEYTI 504

  Fly   498 EARKGHGIDRHLFGLWCAAYESKMDIPAFYDDPMYTKSGGGGNFVLSSSTLGFTANVGF--VAPM 560
            :|..|..||.||..|...|.|...::|..:.|.||..|   ..|:||:|.:..|..: |  ..|:
 Frog   505 QAITGMAIDNHLLALRELAQEHFKELPELFRDEMYLTS---NRFILSTSQVPTTMEM-FCCYGPV 565

  Fly   561 VFDGYGVFYSITSEAVFINTTAYRDSLKTSARKFNDIFKDS 601
            |.:|||..|:...|.:....:::.|...||:.||....::|
 Frog   566 VPNGYGCCYNPQPEHILFCVSSFHDCKDTSSSKFAKAVEES 606

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CROTNP_001334704.1 None
chatXP_002933959.1 Carn_acyltransf 23..610 CDD:376382 161/626 (26%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D167256at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.010

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