DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ALiX and Pdcd6ip

DIOPT Version :9

Sequence 1:NP_651582.1 Gene:ALiX / 43330 FlyBaseID:FBgn0086346 Length:836 Species:Drosophila melanogaster
Sequence 2:XP_006244059.1 Gene:Pdcd6ip / 501083 RGDID:68357 Length:873 Species:Rattus norvegicus


Alignment Length:882 Identity:371/882 - (42%)
Similarity:530/882 - (60%) Gaps:60/882 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MSKFLGVPLKKPSEVDVIKPLNNLIQSTYNGASEEEKGKYGEAVNEFSKQRNTAIWKFFEKYEAS 65
            |:.|:.|.|||.||||:.|||...||.||....||: .:|..|..|.||.|.:|:.:..:|:|.:
  Rat     1 MASFIWVQLKKTSEVDLAKPLVKFIQQTYPSGGEEQ-AQYCRAAEELSKLRRSALGRPLDKHEGA 64

  Fly    66 LEIVYAYYDQICALETKISVSELQI--PFKWKDAFDKGSIFGGKISLTHTSLLYEKVCVLFNIAA 128
            ||.:..||||||::|.|...||.||  .|.|||||||||:|||.:.|...||.|||.|||||.||
  Rat    65 LETLLRYYDQICSIEPKFPFSENQICLTFTWKDAFDKGSLFGGSVKLALASLGYEKSCVLFNCAA 129

  Fly   129 LQSNIAANQSLDSDDGLKLTIKLLQQSAGIFQYLKGATPAAVPSEPTPDLSQDTLTVLQALMVAQ 193
            |.|.|||.|:||:|:|||...|..|.::|.|.::|....:|:..|||.|:|.||:..|..:|:||
  Rat   130 LASQIAAEQNLDNDEGLKTAAKQYQFASGAFLHIKDTVLSALSREPTVDISPDTVGTLSLIMLAQ 194

  Fly   194 AQEVFILKAIKDNLKDQIIAKLCCQAEESYADVLRAMQ-KESV-RSLWEKEWIPTIAGKQAGFHA 256
            |||||.|||.:|.:||.|||||..||.:.:.|..:..| |::: :..:.:|..||:|.||....|
  Rat   195 AQEVFFLKATRDKMKDAIIAKLANQAADYFGDAFKQCQYKDALPKYFYFQEVFPTLAAKQCIMQA 259

  Fly   257 LTQLYQSLVCRAAKKIGEEIARLRNAIDLFKAAQTRSGNETYLDEYFSRAKRNLTESTKDNEFIY 321
            ..:.:||::.:..||.|||||||::|.:|.|...:|......:.::..:..|.|..:.|||:|||
  Rat   260 NAEYHQSILAKQQKKFGEEIARLQHAAELIKNVASRYDEYVNVKDFSDKINRALAAAKKDNDFIY 324

  Fly   322 NEIIPELSTLTSPGKAQLAKPLPIAVPLAENFKDIFSSLVPVELHRALTASDMRRNEIVNVEIMK 386
            ::.:|:|..|...|||.|.||.|:.||:::.|.|:|..:|||.:.::|.....|:.::||..|.:
  Rat   325 HDRVPDLKDLDPIGKATLVKPTPVNVPISQKFTDLFEKMVPVSVQQSLAVFSQRKADLVNRSIAQ 389

  Fly   387 LREATQTLNAVLASLNLPAAVETADGNSGLPPSLKEKANEVRQKGGIENVQTMLKDLPELLNRNR 451
            :||||...|.||||||||||:|...|:: :|.|:..|:..|.::|||:.|..::|:|||||.|||
  Rat   390 MREATTLANGVLASLNLPAAIEDVSGDT-VPQSILTKSTAVVEQGGIQTVDQLIKELPELLQRNR 453

  Fly   452 EILDETERLLDEERDSDNQLRAQFKDRWTRISSDKLTEMFRTNAKKYREVITNAIEADKVVRQKF 516
            |||:|:.||||||..:||.|||:|||||.|..|:.|.:..|....|:|.|:..|::||..|::::
  Rat   454 EILEESLRLLDEEEATDNDLRAKFKDRWQRTPSNDLYKPLRAEGAKFRAVLDKAVQADGQVKERY 518

  Fly   517 EANQKGIQLLSLPPDQIQQSLPSASGSVDPNCSSVQR-LKKLMDDVETIKAEREAIESELKGATF 580
            ::::..|.||..|..::..::|||:.:.....|.|.. ||.|:.:::.||.|||.:|::||...|
  Rat   519 QSHRDTIALLCKPEPELNAAIPSANPAKTMQGSEVVNVLKSLLSNLDEIKKEREGLENDLKSVNF 583

  Fly   581 NMKDEFLIALQKDGAIDEPALSLARIGQVLNPLQQQVRESVERQQSLVSEIQSAHGAF--VSETG 643
            :|..:||.||.:||.|:|.|||:..:.::...|..:|:||:::|:.|:..||.:|..|  :.::.
  Rat   584 DMTSKFLTALAQDGVINEEALSVTELDRIYGGLTTKVQESLKKQEGLLKNIQVSHQEFSKMKQSN 648

  Fly   644 SCGSSRDTLYQELATAFDSYIELSGNLQEGTKFYNDLTQLLVVFQNKISDFVFARKTEKEELLKD 708
            |..|.|:.:.:.||||:|:::||..||:|||||||:||::||.||||.||.|||||||::|||||
  Rat   649 SEASLREEVLKNLATAYDNFVELVANLKEGTKFYNELTEILVRFQNKCSDIVFARKTERDELLKD 713

  Fly   709 LTTESSRQACPATPAL-PSHYASTSGSGSDIPPGSAP----------------------SVPPAA 750
            |....:|:  |:.|:: |..|.|:...|....|..||                      .|||||
  Rat   714 LQQSIARE--PSAPSIPPPAYQSSPAGGHATAPTPAPRTMPPAKPQPPARPPPPVLPANRVPPAA 776

  Fly   751 S----------------TANIPYPAQVQGMPIPYGAQPGVPYPAYVPAPMPQSFNPYA----TLP 795
            :                |.....|.|.||.|.|  ..||  ||.|...|||..:|||.    .:|
  Rat   777 AATAPAGVGTASAAPPQTPGSAPPPQAQGPPYP--TYPG--YPGYCQMPMPMGYNPYTYGQYNMP 837

  Fly   796 YPGNYQYQGFPQGPPPG-HYGTYPGSYANQQGGYPNQ 831
            ||..| :|...|.|.|| ...|||.....||..||.|
  Rat   838 YPPVY-HQSPGQAPYPGPQQPTYPFPQPPQQSYYPQQ 873

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ALiXNP_651582.1 BRO1_Alix 2..347 CDD:185763 157/348 (45%)
V_Alix 362..698 CDD:185748 146/338 (43%)
ALIX_LYPXL_bnd 415..701 CDD:290660 125/288 (43%)
MFMR 733..822 CDD:285072 39/131 (30%)
Pdcd6ipXP_006244059.1 BRO1_Alix 2..350 CDD:185763 157/348 (45%)
V_Alix 365..703 CDD:185748 146/338 (43%)
Amelogenin <819..>873 CDD:197891 22/54 (41%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 309 1.000 Domainoid score I1284
eggNOG 1 0.900 - - E1_KOG2220
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H22614
Inparanoid 1 1.050 640 1.000 Inparanoid score I787
OMA 1 1.010 - - QHG53532
OrthoDB 1 1.010 - - D498845at33208
OrthoFinder 1 1.000 - - FOG0003348
OrthoInspector 1 1.000 - - oto96060
orthoMCL 1 0.900 - - OOG6_102685
Panther 1 1.100 - - LDO PTHR23030
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X4332
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1514.840

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