DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ALiX and pdcd6ip

DIOPT Version :9

Sequence 1:NP_651582.1 Gene:ALiX / 43330 FlyBaseID:FBgn0086346 Length:836 Species:Drosophila melanogaster
Sequence 2:XP_012809018.2 Gene:pdcd6ip / 496474 XenbaseID:XB-GENE-1194420 Length:875 Species:Xenopus tropicalis


Alignment Length:892 Identity:353/892 - (39%)
Similarity:528/892 - (59%) Gaps:76/892 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MSKFLGVPLKKPSEVDVIKPLNNLIQSTYNGASEEEKGKYGEAVNEFSKQRNTAIWKFFEKYEAS 65
            |:.|:.|||||.||||::|||:..|.:||  .|.|::.:|..||.|.:|.|.:|:.:..:|:|.|
 Frog     1 MATFISVPLKKTSEVDLVKPLSKYIHNTY--PSGEDQTEYCRAVEELNKLRKSAVGRPLDKHETS 63

  Fly    66 LEIVYAYYDQICALETKISVSELQ--IPFKWKDAFDKGSIFGGKISLTHTSLLYEKVCVLFNIAA 128
            ||.|..||||:|::|.|...:|.|  :.|.|||||||||||||.:.|...||.|||.||||||.|
 Frog    64 LETVMRYYDQLCSVEPKFPFTESQLCLTFTWKDAFDKGSIFGGSVKLALPSLGYEKTCVLFNIGA 128

  Fly   129 LQSNIAANQSLDSDDGLKLTIKLLQQSAGIFQYLKGATPAAVPSEPTPDLSQDTLTVLQALMVAQ 193
            |.|.||:.|:||:|:.||...|..|.::|.|.::|....:::..:||.|:|.||:..|..:|:||
 Frog   129 LASQIASEQNLDNDEALKAASKFYQLASGAFSHIKDTVLSSLNRDPTVDISPDTVGTLSLIMLAQ 193

  Fly   194 AQEVFILKAIKDNLKDQIIAKLCCQAEESYADVLRAMQKESVRS--LWEKEWIPTIAGKQAGFHA 256
            |||||.|||.:|.:||.:||||..||.:.|.|..:..|.:...|  .:.:|..|.:|.|.....|
 Frog   194 AQEVFFLKATRDKMKDALIAKLANQAADYYGDAFKQCQYKDTLSKYFYFQEVFPILAAKHCIMQA 258

  Fly   257 LTQLYQSLVCRAAKKIGEEIARLRNAIDLFKAAQTRSGNETYLDEYFSRAKRNLTESTKDNEFIY 321
            ....:||::.:..||.||||.||::|.||.|...:|......:.:...:..|.||.:.|||:|||
 Frog   259 HAAYHQSVLAKQQKKFGEEIGRLQHASDLVKTVSSRYDEYVNVKDLADKINRALTAAKKDNDFIY 323

  Fly   322 NEIIPELSTLTSPGKAQLAKPLPIAVPLAENFKDIFSSLVPVELHRALTASDMRRNEIVNVEIMK 386
            ::.:|:|..|...|||.|.||.||.|||::.:.|:|..:||:.:.:.||..:.||.|::|..|.:
 Frog   324 HDRVPDLKDLDPIGKASLVKPTPINVPLSQKYTDLFEKMVPLAIQQCLTVYNQRRAELINATIAQ 388

  Fly   387 LREATQTLNAVLASLNLPAAVETADGNSGLPPSLKEKANEVRQKGGIENVQTMLKDLPELLNRNR 451
            :|:||...|.||||||||||:|...|:| :|.|:..|:..:.::|||:.:..:::||||||.||:
 Frog   389 MRDATTFANGVLASLNLPAAIEDVSGDS-VPQSILNKSKTIIEQGGIQTIDQLIRDLPELLQRNK 452

  Fly   452 EILDETERLLDEERDSDNQLRAQFKDRWTRISSDKLTEMFRTNAKKYREVITNAIEADKVVRQKF 516
            |||||:.:.||||..:||.|:|:|||||.|..|.:|.:..|:....:|.|:..||.||.||::::
 Frog   453 EILDESVKFLDEEEATDNDLKAKFKDRWQRTPSTELYKPLRSEGNNFRSVLDKAIGADAVVKERY 517

  Fly   517 EANQKGIQLLSLPPDQIQQSLPSASGSVDPNCSS-VQRLKKLMDDVETIKAEREAIESELKGATF 580
            :.:::.|.:|..|..::..::|||:.:.....|. |..||.|::.::.:|..||.:|:::|...|
 Frog   518 QCHREAIAILCKPEAELNAAIPSANPAKTMQGSEVVSVLKSLLNQLDDVKKVREQLETDIKSVNF 582

  Fly   581 NMKDEFLIALQKDGAIDEPALSLARIGQVLNPLQQQVRESVERQQSLVSEIQSAHGAF--VSETG 643
            :|..:||.||.:|||::|.|:|:..:.::......:|:|::::|:.|::.||:||..|  :.::.
 Frog   583 DMTTKFLTALAQDGAVNEEAISVTELDRIYGSYTFKVQENLKKQEDLINNIQTAHQEFSKMKQSN 647

  Fly   644 SCGSSRDTLYQELATAFDSYIELSGNLQEGTKFYNDLTQLLVVFQNKISDFVFARKTEKEELLKD 708
            |..:.|:.:.:.||...|:||||..||:||||||||||::|:.:|.|.||.|||||||::|||||
 Frog   648 SEANLREEVLKNLAAGHDNYIELVANLKEGTKFYNDLTEILLKYQCKCSDIVFARKTERDELLKD 712

  Fly   709 LTTESSRQ-ACPATPALPSHYASTSGSGSDI------------------------PPGSAPSVPP 748
            |....:|: :.|:.|.:||:.:::|.|.::.                        ||.:.||..|
 Frog   713 LQQSIAREPSAPSIPQVPSYQSASSSSSTNTSVSSIPTPAPRTVFQSAKQPPPRPPPPTMPSASP 777

  Fly   749 A-ASTANIPYPA-------------------QVQGMPIPYGAQPGVPYPAYVPAPMPQSFNPY-- 791
            . ||.|..|.||                   |.||.|.|  ..||  ||.|...|||..:|||  
 Frog   778 VPASAAQAPNPAPTTAPATDSSQPLSNTIPSQAQGPPYP--TYPG--YPGYYGMPMPVGYNPYMY 838

  Fly   792 --ATLPYPGNYQYQGFPQGPPPGHYGTYPGSYANQQGGYPNQK--PP 834
              .|:|   .|.||      ||.....||..::  ...||.|.  ||
 Frog   839 GQQTIP---PYMYQ------PPSGQAPYPTQHS--AFSYPQQPFFPP 874

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ALiXNP_651582.1 BRO1_Alix 2..347 CDD:185763 153/348 (44%)
V_Alix 362..698 CDD:185748 134/338 (40%)
ALIX_LYPXL_bnd 415..701 CDD:290660 112/288 (39%)
MFMR 733..822 CDD:285072 37/136 (27%)
pdcd6ipXP_012809018.2 BRO1_Alix 2..349 CDD:185763 153/348 (44%)
V_Alix 364..702 CDD:185748 134/338 (40%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 311 1.000 Domainoid score I1308
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H22614
Inparanoid 1 1.050 616 1.000 Inparanoid score I881
OMA 1 1.010 - - QHG53532
OrthoDB 1 1.010 - - D498845at33208
OrthoFinder 1 1.000 - - FOG0003348
OrthoInspector 1 1.000 - - oto102796
Panther 1 1.100 - - LDO PTHR23030
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R147
SonicParanoid 1 1.000 - - X4332
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
1212.110

Return to query results.
Submit another query.