DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ALiX and rhpn2

DIOPT Version :9

Sequence 1:NP_651582.1 Gene:ALiX / 43330 FlyBaseID:FBgn0086346 Length:836 Species:Drosophila melanogaster
Sequence 2:NP_957472.1 Gene:rhpn2 / 321330 ZFINID:ZDB-GENE-030131-9927 Length:683 Species:Danio rerio


Alignment Length:514 Identity:105/514 - (20%)
Similarity:195/514 - (37%) Gaps:124/514 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 LKKPSEVDVIKPLNNLIQSTYNGASEEEKGKYGEAVNEFSKQRNTAIWKFFEKYEASLEIVYAYY 73
            ||:..:||...||.:.|...|:    |:...:...:::....|...  :...:..:.::::..|:
Zfish   117 LKETKDVDFSVPLKDFILEHYS----EDGSNFQNQIDDLMDLRQAC--RTPSRNNSGVDLIANYF 175

  Fly    74 DQICALETKI--SVSELQIPFKWKDAFDKGSIFGGKISLTHTSLLYEKVCVLFNIAALQSNIAAN 136
            .|:..|||:.  ...::.|.|.|.|:|....:....|||       ||..:|||:|||.|.|...
Zfish   176 SQLSFLETRFFSPTRQIGIFFTWYDSFTGMPVCQNNISL-------EKASMLFNMAALYSQIGTR 233

  Fly   137 QSLDSDDGLKLTIKLLQQSAGIFQYLKGATPAAVPSEPTPDLSQDTLTVLQALMVAQAQEVFILK 201
            ....:..||:..|...|:|||:...||    ......|:.|:|...|::|..||:|||||....:
Zfish   234 ADRQTLAGLEDAIAAFQKSAGVLHLLK----ETFTHTPSYDMSPAMLSMLFRLMLAQAQECLFEQ 294

  Fly   202 AIKDNLKDQI-----IAKLCCQAEESYADVLRAMQKESVRSLWEKEWIPTIAGKQAGFHALTQLY 261
            .....::::.     :|:...:..|:||.|.::|.:..:.......|......|...:::|...:
Zfish   295 ITLPGIRNEFFCLLKMAQEAAKVAETYAQVHQSMIETPITKNVPFFWTTMSQLKINHYNSLAHYF 359

  Fly   262 QSLVC---------------RAAKKIGEEIARLRNAIDLFKAAQTR------------SGNETYL 299
            .|...               :|..::.:.:...|:.:|:.|....|            .|:|..:
Zfish   360 VSTALLDHQLNPSDDEDKQEKALSQLYDAMPEGRSPLDILKNKDERRRIGKAHLQRSIMGHEEAI 424

  Fly   300 DEYFSR----------------AKRNLT---ESTKDNEFIYNEIIPELSTLTSPGKAQLAKPLPI 345
            ..:..|                ..|:||   ::.|::||....:.|::.:.|.       |...:
Zfish   425 RTHCRRRHLQKLDILSDILRASLNRSLTKFEQNDKEDEFTDYMLAPDIISKTE-------KKAEM 482

  Fly   346 AVPLAENFK--DIFSSLVPVELHRALTASDMRRNEIVNVEIMKLR-EATQTLNAVLASLNL---- 403
            .:|.|...|  |:|..|.|:.:..|                 |.| .|.:|:..:|...:|    
Zfish   483 EIPAATKVKVTDLF
QRLGPLSVFSA-----------------KQRWTAPRTIRLILQDRDLGFTL 530

  Fly   404 ----PAAVETADGNSGLPPSLKEKANEVRQKG-------------GIENVQTMLKDLPE 445
                |..:::.|      |.....|..:::..             |:.:|..:|||:.|
Zfish   531 KGDAPVQIQSLD------PLCPAAAGGLKEGDYLVAVGDTDCKWMGVSDVMKLLKDVDE 583

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ALiXNP_651582.1 BRO1_Alix 2..347 CDD:185763 81/390 (21%)
V_Alix 362..698 CDD:185748 18/106 (17%)
ALIX_LYPXL_bnd 415..701 CDD:290660 8/44 (18%)
MFMR 733..822 CDD:285072
rhpn2NP_957472.1 HR1_Rhophilin-2 27..108 CDD:212024
BRO1_Rhophilin_2 112..496 CDD:185772 85/402 (21%)
PDZ 524..591 CDD:238080 11/66 (17%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 649..683
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG2220
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

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