DRSC/TRiP Functional Genomics Resources

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Protein Alignment ALiX and Ptpn23

DIOPT Version :9

Sequence 1:NP_651582.1 Gene:ALiX / 43330 FlyBaseID:FBgn0086346 Length:836 Species:Drosophila melanogaster
Sequence 2:NP_476552.2 Gene:Ptpn23 / 117552 RGDID:619892 Length:1666 Species:Rattus norvegicus


Alignment Length:894 Identity:228/894 - (25%)
Similarity:387/894 - (43%) Gaps:110/894 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 LKKPSEVDVIKPLNNLIQSTYNGASEEEKGKYGEAVNEFSKQRNTAIWKFFEKYEASLEIVYAYY 73
            ||:..:......:...:...|.    |....|.|.:.:....|..|| :....:| ...::..|.
  Rat    14 LKEAGDFHFQSAVKKFVLKNYG----ENPEAYNEELKKLELLRQNAI-RVARDFE-GCSVLRKYL 72

  Fly    74 DQICALETKI---SVSELQIPFKWKDAFDKGSIFGGKISLTHTSLLYEKVCVLFNIAALQSNIAA 135
            .|:..|::::   |..|..:...|.:      ||.|| |:.|..:.||:.|:|:|:.||.|.:.|
  Rat    73 GQLHYLQSRVPMGSGQEAAVAITWTE------IFSGK-SVAHEDIKYEQACILYNLGALHSMLGA 130

  Fly   136 NQSLDSDDGLKLTIKLLQQSAGIFQYLKGATPAAVPSEPTPDLSQDTLTVLQALMVAQAQEVFIL 200
            .....|::|:|::....|.:||.|.||:...|.|.    :.|:|:..||:...||:.||||..:.
  Rat   131 MDKRVSEEGMKVSCTHFQCAAGAFAYLREHFPQAF----SVDMSRQILTLNVNLMLGQAQECLLE 191

  Fly   201 KAIKDNLKDQIIAKLCCQAEESYADVLRAMQKESVRSLW---EKEWIPTIAGKQAGFHALTQLYQ 262
            |::.||.|..::|::..|..:.|.:..||::.....||.   :|:|...:..|...|.|:..|:.
  Rat   192 KSMLDNRKSFLVARISAQVVDYYKEACRALENPDTASLLGRIQKDWKKLVQMKIYYFAAVAHLHM 256

  Fly   263 SLVCRAAKKIGEEIARLRNAID-LFKAAQTRSGNETYLDEYFSRA------KRNLTESTKDNEFI 320
            .......:|.||.:|..::|:| |.:|.:...|....:.:....|      |.|  .:.|||:||
  Rat   257 GKQAEEQQKFGERVAYFQSALDKLNEAIKLAKGQPDTVQDALRFAMDVIGGKYN--SAKKDNDFI 319

  Fly   321 YNEIIPELSTLTSPGKAQLAKPLPI-AVPLAENFKDIFSSLVPVELHRALTASDMRRNEIVNVEI 384
            |:|.:|.|.||.....|.|.||||: ....|....|||:.|||:..|.|.:.....:.:::...:
  Rat   320 YHEAVPALDTLQPVKGAPLVKPLPVNPTDPAVTGPDIF
AKLVPMAAHEASSLYSEEKAKLLREML 384

  Fly   385 MKLREATQTLNAVLASLNL-PAAVETADGNSGLPPSLKEK--ANEVRQ-------------KGGI 433
            .|:.:..:.|:..:.|:.| |..|:..|..:.:||.|.||  |..||.             .|..
  Rat   385 AKIEDKNEVLDQFMDSMQLDPDTVDNLDAYNHIPPQLMEKCAALSVRPDTVKNLVQSMQVLSGVF 449

  Fly   434 ENVQTMLKDLPELLNRNREILDETERLLDEERDSDNQLRAQFKDRWTRISSDKLTEMFRTNAKKY 498
            .:|:..|||:       |::|:|.|.   :|:.....|..........::..:|.|:.|..| ||
  Rat   450 TDVEASLKDI-------RDLLEEDEL---QEQKLQETLGQAGAGPGPSVTKAELGEVRREWA-KY 503

  Fly   499 REVITNAIEADKVVRQKFEANQKGIQLLSLPPDQIQQSLPSASGSVDPNCSSV-QRLKKLMDDVE 562
            .||...|...:..:.:....:...::|||.|.||::.:||:.  ::.|...:| |.||:::..|:
  Rat   504 TEVHEKASFTNSELHRAMNLHVGNLRLLSGPLDQVRAALPTP--ALTPEDKAVLQNLKRILAKVQ 566

  Fly   563 TIKAEREAIESELKGATFNMKDEFLIALQKDGAIDEPAL---SLARIGQVLNPLQQQV--RESVE 622
            .::.:|.::|.:|:  ....||:...:|......:...|   .|.:..|:...|:|.:  :::|.
  Rat   567 EMRDQRVSLEQQLR--ELIQKDDITASLVTTDHSEMKKLFEEQLKKYDQLKVYLEQNLAAQDNVL 629

  Fly   623 RQQSLVSEIQSAHGAFVSETGSCGSSRDTLYQELATAFDSYIELSGNLQEGTKFYNDLTQLLVVF 687
            |..:..:...:|....:||.....:|  || |.|..::::|.:|....|||..||.||...:...
  Rat   630 RALTEANVQYAAVRRVLSELDQKWNS--TL-QTLVASYEAYEDLMKKSQEGKDFYADLESKVAAL 691

  Fly   688 QNKISDFVFARKTEKEELLKDLTTESSRQACPATPALPSHYASTSGSGSDIPPGSAP----SVPP 748
            ..:......|::..:::|   |..|..::|.|..|..|....|....|.....|..|    |:||
  Rat   692 LERAQSLCRAQE
AARQQL---LDRELKKKAPPPRPTAPKPLLSRREEGEAAEAGDQPEELRSLPP 753

  Fly   749 -AASTANIPYPAQVQGMPIPY--GAQPGVPYPA--YVPAPMP--------QSFNPYATLPY-PGN 799
             ..:...:|.|......|:.:  |..||...||  |:..|:|        |...|.|.:|. ||.
  Rat   754 DMMAGPRLPDPFLGTAAPLHFSPGPFPGSTGPATHYLSGPLPPGTYSGPTQLMQPRAAVPMAPGP 818

  Fly   800 YQYQG---------FPQGPPPGHYGTYPGSYA-----NQQGGYPNQKPP 834
            ..|..         .|:..|  .:|.....||     ....|.|:..||
  Rat   819 VLYPAPVYTSELGLVPRSSP--QHGIVSSPYAGVGPPQPVVGLPSAPPP 865

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ALiXNP_651582.1 BRO1_Alix 2..347 CDD:185763 98/351 (28%)
V_Alix 362..698 CDD:185748 82/357 (23%)
ALIX_LYPXL_bnd 415..701 CDD:290660 73/306 (24%)
MFMR 733..822 CDD:285072 27/115 (23%)
Ptpn23NP_476552.2 BRO1_HD-PTP_like 2..357 CDD:185762 100/361 (28%)
V_HD-PTP_like 362..702 CDD:185747 82/357 (23%)
ALIX_LYPXL_bnd 417..703 CDD:290660 73/303 (24%)
Y_phosphatase 1250..1480 CDD:278528
PTPc 1250..1479 CDD:238006
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG2220
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D498845at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.820

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