DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sce and pcgf5b

DIOPT Version :10

Sequence 1:NP_477509.1 Gene:Sce / 43327 FlyBaseID:FBgn0003330 Length:435 Species:Drosophila melanogaster
Sequence 2:NP_001038700.1 Gene:pcgf5b / 692252 ZFINID:ZDB-GENE-060512-34 Length:232 Species:Danio rerio


Alignment Length:86 Identity:29/86 - (33%)
Similarity:38/86 - (44%) Gaps:4/86 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly    38 RSLHSELMCPICLDMLKKTMTTKECLHRFCSDCIVTALRSGNKECPTCRKKLVSK---RSLRADP 99
            |..:..:.|.:|...|.|..|..||||.||..|||......| :||.|..::...   ..||.|.
Zfish    10 RDFNHFITCFVCKGYLIKPTTVTECLHTFCKSCIVQHFEDSN-DCPKCGIQVHETNPLEMLRLDN 73

  Fly   100 NFDLLISKIYPSREEYEAIQE 120
            ..:.:|.|:.|...|.|..||
Zfish    74 TLEEVIFKLVPGLREKEQQQE 94

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SceNP_477509.1 COG5222 <10..154 CDD:227547 29/86 (34%)
RING_Ubox 41..110 CDD:473075 23/71 (32%)
RAWUL_RING1_like 326..431 CDD:340606
pcgf5bNP_001038700.1 RING-HC_PCGF5 6..100 CDD:438395 29/86 (34%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 93..128 2/2 (100%)
RAWUL_PCGF5 132..232 CDD:340604
Blue background indicates that the domain is not in the aligned region.

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