DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Sce and pcgf6

DIOPT Version :10

Sequence 1:NP_477509.1 Gene:Sce / 43327 FlyBaseID:FBgn0003330 Length:435 Species:Drosophila melanogaster
Sequence 2:NP_001082838.1 Gene:pcgf6 / 555238 ZFINID:ZDB-GENE-060526-178 Length:277 Species:Danio rerio


Alignment Length:99 Identity:27/99 - (27%)
Similarity:42/99 - (42%) Gaps:10/99 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly    23 PQEVITDSTEIAVSPRSLHSELMCPICLDMLKKTMTTKECLHRFCSDCIVTALRSGNKECPTCRK 87
            |::...|...:.:  |..:..:.|.:|........|..||||.||..|||......|: ||.|  
Zfish    39 PKQQADDEPSLPL--RDFYPYIRCALCNGFFIDATTITECLHTFCKSCIVKHFFYSNR-CPNC-- 98

  Fly    88 KLVSKRS-----LRADPNFDLLISKIYPSREEYE 116
            .:|..::     :|.|.....::.|:.|..||.|
Zfish    99 SIVVHQTQPLYCIRPDRQLQDIVFKMVPYLEEDE 132

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SceNP_477509.1 COG5222 <10..154 CDD:227547 27/99 (27%)
RING_Ubox 41..110 CDD:473075 20/73 (27%)
RAWUL_RING1_like 326..431 CDD:340606
pcgf6NP_001082838.1 RING-HC_PCGF6 51..109 CDD:438396 18/62 (29%)
RAWUL_PCGF6 182..271 CDD:340605
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.