DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sce and rnf2

DIOPT Version :9

Sequence 1:NP_477509.1 Gene:Sce / 43327 FlyBaseID:FBgn0003330 Length:435 Species:Drosophila melanogaster
Sequence 2:NP_998872.1 Gene:rnf2 / 407872 XenbaseID:XB-GENE-981241 Length:336 Species:Xenopus tropicalis


Alignment Length:430 Identity:193/430 - (44%)
Similarity:231/430 - (53%) Gaps:120/430 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 NKTWELSLYELQRKPQEVITDSTEIAVSPRSLHSELMCPICLDMLKKTMTTKECLHRFCSDCIVT 73
            :||||||||||||.|||.|||..||.||||||||||||||||||||.||||||||||||:|||:|
 Frog    14 SKTWELSLYELQRTPQEAITDGLEIVVSPRSLHSELMCPICLDMLKNTMTTKECLHRFCADCIIT 78

  Fly    74 ALRSGNKECPTCRKKLVSKRSLRADPNFDLLISKIYPSREEYEAIQEKVMAKFNQTQSQQALVNS 138
            |||||||||||||||||||||||.|||||.|||||||||:||||.||:|:|:.|:..:||||.:|
 Frog    79 ALRSGNKECPTCRKKLVSKRSLRPDPNFDALISKIYPSRDEYEAHQERVLARINKHNNQQALSHS 143

  Fly   139 INEGIKLQSQNRPQRFRTKGGGGGGGGGGNGNGAANVAAPPAPGAPTAVGRNASNQMHVHDTASN 203
            |.||:|:|:.||..|       |......||:||                               
 Frog   144 IEEGLKIQALNRLPR-------GKKPQVENGSGA------------------------------- 170

  Fly   204 DSNSNTNSIDRENRDPGHSGTSAASAITSASNAAPSSSANSGASTSATRMQVDDASNPPSVRSTP 268
                      .:|.|..|           .|||:..|:..:|.|...|:...|            
 Frog   171 ----------EDNADSSH-----------CSNASVHSNQEAGPSNKRTKTSDD------------ 202

  Fly   269 SPVPSNSSSSKPKRAMSVLTSERSEESESDSQMDCRTEGDSNIDTEGEGNGELGINDEIELVFKP 333
                            |.|..:.:.|:.|   ||...:|.|                ||||||:|
 Frog   203 ----------------SGLELDTNNETAS---MDSVLDGAS----------------EIELVFRP 232

  Fly   334 HPTEMSADNQLIRALKENCVRYIKTTANATVDHLSKYLAMRLTLDLGADLPE-------ACRVLN 391
            |||.|..|:..       ..|||||:.||||||||||||:||.|:......|       |.....
 Frog   233 HPTLMEKDDSA-------QTRYIKTSGNATVDHLSKYLAVRLALEEFRSKGENNQMSLNAASEKQ 290

  Fly   392 FCIYVAPQPQQLVILNGNQTLHQVNDKFWKVNKPMEMYYS 431
            :.||:|....|..:|||:.:|..|::|:||||||||:||:
 Frog   291 YTIYIATANGQFTVLNGSFSLELVSEKYWKVNKPMELYYA 330

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SceNP_477509.1 RING 45..89 CDD:238093 40/43 (93%)
RAWUL 336..431 CDD:292824 44/101 (44%)
rnf2NP_998872.1 COG5222 <10..>103 CDD:227547 79/88 (90%)
RING-HC_RING1_like 51..91 CDD:319445 36/39 (92%)
RING-HC finger (C3HC4-type) 51..90 CDD:319445 35/38 (92%)
RAWUL_RING2 225..330 CDD:340687 53/111 (48%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 131 1.000 Domainoid score I5104
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 1 1.000 - - H2199
Inparanoid 1 1.050 344 1.000 Inparanoid score I2272
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1319463at2759
OrthoFinder 1 1.000 - - FOG0003138
OrthoInspector 1 1.000 - - otm48524
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R3349
SonicParanoid 1 1.000 - - X2531
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
88.090

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