DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Sce and Ring1

DIOPT Version :9

Sequence 1:NP_477509.1 Gene:Sce / 43327 FlyBaseID:FBgn0003330 Length:435 Species:Drosophila melanogaster
Sequence 2:NP_997714.2 Gene:Ring1 / 309626 RGDID:3576 Length:406 Species:Rattus norvegicus


Alignment Length:492 Identity:204/492 - (41%)
Similarity:241/492 - (48%) Gaps:153/492 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MTSLDPAPN--KTWELSLYELQRKPQEVITDSTEIAVSPRSLHSELMCPICLDMLKKTMTTKECL 63
            ||:...|.|  ||||||||||.|.|||.|.|.||||||||||||||||||||||||.||||||||
  Rat     1 MTTPANAQNASKTWELSLYELHRTPQEAIMDGTEIAVSPRSLHSELMCPICLDMLKNTMTTKECL 65

  Fly    64 HRFCSDCIVTALRSGNKECPTCRKKLVSKRSLRADPNFDLLISKIYPSREEYEAIQEKVMAKFNQ 128
            |||||||||||||||||||||||||||||||||.|||||.||||||||||||||.|::|:.:.::
  Rat    66 HRFCSDCIVTALRSGNKECPTCRKKLVSKRSLRPDPNFDALISKIYPSREEYEAHQDRVLIRLSR 130

  Fly   129 TQSQQALVNSINEGIKLQSQNRPQRFR----------TKGGGGGGGGGGNGNG-------AANVA 176
            ..:||||.:||.||:::|:.:|.||.|          |..||.|..|.|.|:|       |.:.|
  Rat   131 LHNQQALSSSIEEGLRMQAMHRAQRVRRPMPGSDQTTTMSGGEGEPGEGEGDGEDISSDSAPDSA 195

  Fly   177 APPAPGAPTAVGRNASNQMHVHDTASNDSNSNTNSIDRENRDPGHSGTSAASAITSASNAAPSSS 241
            ..|||..|...|...|:                            .||...:|..:...|....|
  Rat   196 PGPAPKRPRGGGAGGSS----------------------------VGTGGGAAGGACGGAGSEDS 232

  Fly   242 ANSGASTSATRMQVDDASNPPSVRSTPSPVPSNSSSSKPKRAMSVLTSERSEESESDSQMDCRTE 306
            .:.|.:.....:      .|||....|||                                    
  Rat   233 GDRGGTLGGGTL------GPPSPPGAPSP------------------------------------ 255

  Fly   307 GDSNIDTEGEGNGELGINDEIELVFKPHPTEMSADNQLIRALKENC-VRYIKTTANATVDHLSKY 370
                    .|..|      ||||||:|||        |:....|.| .||:|||.||||||||||
  Rat   256 --------PEPGG------EIELVFRPHP--------LLVEKGEYCQTRYVKTTGNATVDHLSKY 298

  Fly   371 LAMRLTLDL--------------------GAD-------------------LP--EACRVLNFCI 394
            ||:|:.|:.                    |.|                   ||  |......:.|
  Rat   299 LALRIALERRQQQETVEPGGPGGGASDTGGPDGGGGERGVSGGGEGPEEPALPSLEGVSEKQYTI 363

  Fly   395 YVAPQPQQLVILNGNQTLHQVNDKFWKVNKPMEMYYS 431
            |:||.......|||:.||..||:|||||::|:|:.|:
  Rat   364 YIAPGGGAFTTLNGSLTLELVNEKFWKVSRPLELCYA 400

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SceNP_477509.1 RING 45..89 CDD:238093 42/43 (98%)
RAWUL 336..431 CDD:292824 45/136 (33%)
Ring1NP_997714.2 Necessary for transcriptional repression. /evidence=ECO:0000250 30..234 121/231 (52%)
RING-HC_RING1 47..90 CDD:319653 41/42 (98%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 151..263 35/195 (18%)
Nuclear localization signal. /evidence=ECO:0000250 201..204 0/2 (0%)
Necessary for interaction with CBX2. /evidence=ECO:0000250 230..406 65/235 (28%)
RAWUL_RING1 261..400 CDD:340686 54/146 (37%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 309..354 4/44 (9%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 93 1.000 Domainoid score I7358
eggNOG 1 0.900 - - E1_KOG0311
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 314 1.000 Inparanoid score I2489
OMA 1 1.010 - - QHG48576
OrthoDB 1 1.010 - - D1319463at2759
OrthoFinder 1 1.000 - - FOG0003138
OrthoInspector 1 1.000 - - otm45446
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR46076
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X2531
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
1110.940

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