DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Sce and Pcgf2

DIOPT Version :10

Sequence 1:NP_477509.1 Gene:Sce / 43327 FlyBaseID:FBgn0003330 Length:435 Species:Drosophila melanogaster
Sequence 2:NP_033571.1 Gene:Pcgf2 / 22658 MGIID:99161 Length:342 Species:Mus musculus


Alignment Length:345 Identity:75/345 - (21%)
Similarity:112/345 - (32%) Gaps:118/345 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly    30 STEIAVSPRSLHSELMCPICLDMLKKTMTTKECLHRFCSDCIVTALRSGNKECPTCRKKLVSKR- 93
            :|.|.::  .|:..|||.:|........|..||||.||..|||..|.: ||.||.|..::...| 
Mouse     4 TTRIKIT--ELNPHLMCALCGGYFIDATTIVECLHSFCKTCIVRYLET-NKYCPMCDVQVHKTRP 65

  Fly    94 --SLRADPNFDLLISKIYPS---------REEYEAI------------QEKVMAKFNQTQSQQAL 135
              |:|:|.....::.|:.|.         |:.|.|.            :.:|:.:.........:
Mouse    66 LLSIRSDKTLQDIVYKLVPGLFKDEMKRRRDFYAAYPLTEVPNGSNEDRGEVLEQEKGALGDDEI 130

  Fly   136 VN-SIN--EGIKLQSQNRPQRFRTKGGGGGGGGGG------------------------------ 167
            |: ||.  ||::   ....::..|:.|.|.....|                              
Mouse   131 VSLSIEFYEGVR---DREEKKNLTENGDGDKEKTGVRFLRCPAAMTVMHLAKFLRNKMDVPSKYK 192

  Fly   168 ---------------------------NGNGAANVAAPPA------PGAPT-AVGRN---ASNQM 195
                                       ||.........||      |..|| :.|.|   ||...
Mouse   193 VEILYEDEPLKEYYTLMDIAYIYPWRRNGPLPLKYRVQPACKRLTLPTVPTPSEGTNTSGASECE 257

  Fly   196 HVHDTASNDSN-SNTNSIDRENRDPGHSGTSA----------------ASAITSASNAAPSSSAN 243
            .|.|.|.:.:. ..|:|.......|.|...|:                |:..|:|:|...|:...
Mouse   258 SVSDKAPSPATLPATSSSLPSPATPSHGSPSSHGPPATHPTSPTPPSTAAGTTTATNGGTSNCLQ 322

  Fly   244 SGASTSATR-MQVDDASNPP 262
            :.:|||..| |.|:.|..||
Mouse   323 TPSSTSRGRKMTVNGAPCPP 342

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SceNP_477509.1 COG5222 <10..154 CDD:227547 38/150 (25%)
RING_Ubox 41..110 CDD:473075 25/71 (35%)
RAWUL_RING1_like 326..431 CDD:340606
Pcgf2NP_033571.1 RING-HC_PCGF4 5..101 CDD:438394 31/98 (32%)
Nuclear localization signal. /evidence=ECO:0000255 81..95 2/13 (15%)
RAWUL_PCGF2 130..228 CDD:340684 11/100 (11%)
PHA03247 <222..304 CDD:223021 17/81 (21%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 237..342 27/104 (26%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.