DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sce and trul-1

DIOPT Version :9

Sequence 1:NP_477509.1 Gene:Sce / 43327 FlyBaseID:FBgn0003330 Length:435 Species:Drosophila melanogaster
Sequence 2:NP_001370339.1 Gene:trul-1 / 173412 WormBaseID:WBGene00015194 Length:451 Species:Caenorhabditis elegans


Alignment Length:113 Identity:23/113 - (20%)
Similarity:44/113 - (38%) Gaps:25/113 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    46 CPICLDMLKKT--MTTKECLHRFCSDCIVTALRSGNKECPTCRKKLVSKRSLRADPNFDLLISKI 108
            |.||.:.||:.  ::...|.|.:...||...:.: .::||:|| :.|.|..         .:.|:
 Worm    13 CSICFEDLKQNDKISAIVCGHIYHHGCISQWIAT-KRQCPSCR-RTVPKNG---------FVEKL 66

  Fly   109 Y------------PSREEYEAIQEKVMAKFNQTQSQQALVNSINEGIK 144
            :            |...:|.....|:.......|.:...:|:.|:.:|
 Worm    67 FFDVQRMGGEAEKPPEIDYREEHYKLSTSLKVEQEKLGTLNTENKNLK 114

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SceNP_477509.1 RING 45..89 CDD:238093 13/44 (30%)
RAWUL 336..431 CDD:292824
trul-1NP_001370339.1 RING-H2_TTC3 12..54 CDD:319395 11/41 (27%)
SMC_prok_A <84..>261 CDD:274009 6/31 (19%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R3349
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.030

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