DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sce and efcab14

DIOPT Version :10

Sequence 1:NP_477509.1 Gene:Sce / 43327 FlyBaseID:FBgn0003330 Length:435 Species:Drosophila melanogaster
Sequence 2:XP_004914044.1 Gene:efcab14 / 100380110 XenbaseID:XB-GENE-5791088 Length:464 Species:Xenopus tropicalis


Alignment Length:256 Identity:57/256 - (22%)
Similarity:94/256 - (36%) Gaps:74/256 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   169 GNGAANVAAPPAPGAP----------TAV-------GRNASNQMHVH-----DTASNDSNSNTNS 211
            |:||.: |.||||..|          .|:       ||..:.:...|     :..::||:::|..
 Frog     2 GSGALS-AGPPAPPTPHKKMKKRKELNALIGLAGDGGRKKAKKGSGHRLLRTEPPASDSDTDTEE 65

  Fly   212 IDR----ENRDPGHSGTSAASAITSASNAAPSSSANSGASTSAT-----RMQVDDASNPPSVRST 267
            .|.    |:|   |......|.:.......|.......|:...|     .|||....|..:::..
 Frog    66 EDEFGSLEDR---HGRFGRGSFLQCCKICYPLCGFVVLAACVVTCIGLVWMQVVLKENMDALKEK 127

  Fly   268 PSPVPSNSSSS---KPKRAMSVLTSERSEESESDSQMDCRTEGDSNIDTEGEGNGELGINDEIEL 329
            ...:.||..||   .||....:|:.::..|       |..|             ||.|:|.    
 Frog   128 FRAMESNQKSSLEELPKINEDLLSKQKYLE-------DIMT-------------GEKGLNK---- 168

  Fly   330 VFKPHPTEMSADNQLIRALKENCVRYIKTTANATVDHLSKYLAMRLTLDLGADLPEACRVL 390
             ...:.|||   |:.| |:..:.|.::|    ||:...|:.:.:..|:   |:|.::...|
 Frog   169 -LWTNITEM---NKQI-AVLTSAVNHLK----ATIKSASELINLPNTM---AELQKSVATL 217

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SceNP_477509.1 COG5222 <10..154 CDD:227547
RING_Ubox 41..110 CDD:473075
RAWUL_RING1_like 326..431 CDD:340606 15/65 (23%)
efcab14XP_004914044.1 ATG17_like <113..302 CDD:427715 33/141 (23%)
FRQ1 <403..460 CDD:444056
Blue background indicates that the domain is not in the aligned region.

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