DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hsdl2 and pecr

DIOPT Version :10

Sequence 1:NP_651578.1 Gene:Hsdl2 / 43325 FlyBaseID:FBgn0039537 Length:412 Species:Drosophila melanogaster
Sequence 2:NP_001017727.1 Gene:pecr / 550422 ZFINID:ZDB-GENE-050417-232 Length:299 Species:Danio rerio


Alignment Length:259 Identity:61/259 - (23%)
Similarity:109/259 - (42%) Gaps:30/259 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MINTGKLAGRTLFITGASRGIGKEIALKAARDGANIVVAAKTAEPHPKLPGTIYSAAEEI----- 60
            :...|....:...:||...||||.|..:..:.|.::|::::..|       .:.|||||:     
Zfish     6 VFKAGLFNHKVAVVTGGGTGIGKAITSELLQLGCSVVISSRKLE-------RLKSAAEELTLKIP 63

  Fly    61 EKAGGKAYPCVVDVRDEQQVRSAVEAAVAKFGGIDIVINNASAISLTNTPDTDMKRYDLMHNINT 125
            ..:..|..|...::|:|.:|::.:.:.:...|.||.::||......:.......|.:..:.:.|.
Zfish    64 SSSPAKVTPIECNIRNEDEVKNLMASTLKLHGRIDFLVNNGGGQFSSPANMMSAKGWKAVIDTNL 128

  Fly   126 RGTFLVSKVCLPYLKKSNHAHILNISPPLSMKPKWFG-PHVAYT-MAKYGMSMCVLGMAAEFKDE 188
            .||||..:.......|.:...|:||     :...|.| |.:|:| .|:..:......:|.|:...
Zfish   129 NGTFLCCREAYNAWMKDHGGVIVNI-----IADMWKGFPGMAHTGAARAAVDNLTKSLAIEWAHS 188

  Fly   189 GISVNALWPRTAIHTAAIEMLT--GP---------DSAKWSRKPEIMADAAYAILTREPRQSTG 241
            |:.:|::.|.|.|...|:|...  ||         ..||....||.::.|...:|:......||
Zfish   189 GVRINSVAPGTIISKTAMENYKEYGPTLFKMSVPFSPAKRLGVPEEISPAVCFLLSPAANYITG 252

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Hsdl2NP_651578.1 PRK08278 7..277 CDD:181349 60/253 (24%)
SCP2 306..408 CDD:442486
pecrNP_001017727.1 TER_DECR_SDR_a 28..263 CDD:187627 55/237 (23%)
Blue background indicates that the domain is not in the aligned region.

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