DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Hsdl2 and zgc:101858

DIOPT Version :10

Sequence 1:NP_651578.1 Gene:Hsdl2 / 43325 FlyBaseID:FBgn0039537 Length:412 Species:Drosophila melanogaster
Sequence 2:NP_001005597.1 Gene:zgc:101858 / 449555 ZFINID:ZDB-GENE-040927-13 Length:265 Species:Danio rerio


Alignment Length:244 Identity:70/244 - (28%)
Similarity:121/244 - (49%) Gaps:33/244 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 GKLAGRTLFITGASRGIGKEIALKAARDGANIVVAAKTAEPHPKLPGTIYSAAEEIEKAGGKAYP 69
            |.|..:...|||||.|||...||..|:.||.:.:..:..|       .:...|:|.| |.|.|.|
Zfish    10 GSLNDKVTLITGASSGIGAGTALLFAKLGARLALNGRDVE-------NLTKVAKECE-ACGAAKP 66

  Fly    70 CVV--DVRDEQQVRSAVEAAVAKFGGIDIVINNASAISLTNTPDTDMKRYDLMHNINTRGTFLVS 132
            .:|  |:.||:.||..||..:|.||.:|:::|:|..:::.:...|||.:||.:.::|.|..:.::
Zfish    67 LLVAGDLTDEETVRRTVEEVIAHFGRLDVLVNSAGILAMGSIETTDMAQYDKVMSVNVRSIYHLT 131

  Fly   133 KVCLPYLKKSNHAHILNISPPLSMKPKWFGPHVAYTMAKYGMSMCVLGMAAEFKDEGISVNALWP 197
            .:|:|:|.|:. ..|:|:|.....:.  |...:||.|:|..:......:|.|...:.:.||::.|
Zfish   132 HLCVPHLIKTK-GSIVNVSSVNGQRS--FPGVLAYCMSKSAIDQFTRCVALELASKQVRVNSVCP 193

  Fly   198 R---TAIHTAAIEMLTGPDSAKWSR------------KPEIMADAAYAI 231
            .   |.:|..|     |.|..::::            :|..:.:.|:||
Zfish   194 GVIITEVHKRA-----GLDEEQYAQFIEKCKVTHALGRPGEVDEVAHAI 237

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Hsdl2NP_651578.1 PRK08278 7..277 CDD:181349 69/242 (29%)
SCP2 306..408 CDD:442486
zgc:101858NP_001005597.1 SDR_c11 12..262 CDD:187622 69/242 (29%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.