DRSC/TRiP Functional Genomics Resources

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Protein Alignment Tusp and Tulp1

DIOPT Version :9

Sequence 1:NP_001263014.1 Gene:Tusp / 43317 FlyBaseID:FBgn0039530 Length:1433 Species:Drosophila melanogaster
Sequence 2:XP_006256279.1 Gene:Tulp1 / 309900 RGDID:1311062 Length:544 Species:Rattus norvegicus


Alignment Length:595 Identity:143/595 - (24%)
Similarity:208/595 - (34%) Gaps:155/595 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   921 DEETQSPTPTP--------SSSSMKRTPTVVSIAPALPDS-ITRSCSVGYLDSVAITPSDEA--- 973
            :|:..||.|.|        .....|:.|.    .|..|:| ..|....|.... ...|:|.|   
  Rat    19 EEDWLSPEPPPRPKQRPAQGQKLRKKKPE----TPESPESKPPRRAGAGRRKH-GEPPADPAEPR 78

  Fly   974 ------LSALRKDAPNKR----LILV----------DKKRNRRKRQQQEDARRHKLQQTGKSKSL 1018
                  ...||.....||    ..||          |.:.:.......:|....|.::.||.:. 
  Rat    79 TEQTVYAKFLRDPEAKKRDPRETFLVARAPDVGGEEDSEEDSDDDDDDDDDDEEKEKKEGKKEK- 142

  Fly  1019 DSCDLLSLQTKLSSKEHEQVVRKLQEISDSSACSSAANTLCFKCRNNMSPSSACKRCQPSASSVL 1083
                 .||..|.:.||.|:..:.|....|..:..:....|..| :..:...:..::.:...:...
  Rat   143 -----SSLPPKKAPKERERKTKALGPKGDVGSPDAPQKPLKTK-KKEVGEGTKLRKVKKKGAGET 201

  Fly  1084 DEITAVVPAVEPAKESPAVQAKPAPKKRFDVITSFTDSPLFTRKHRFGIGRSKETAGTENSTPLL 1148
            |:        .|: ||||...|..|...|.|                |.|.:.| .|.:...|..
  Rat   202 DK--------NPS-ESPATVRKKIPASMFLV----------------GEGGTAE-KGVKKKGPPK 240

  Fly  1149 GRKQDNGFSFVKQLSEVR-------WRRKEQPAQAQVNGSSNASTLERQPQPEITGAACGTVEAT 1206
            |.:::.     |:..|..       .|...|..:|:..|...... ||.|.|             
  Rat   241 GSEEEK-----KEEEEEEEEDASPVMRNSNQKGRAKGKGKKKVKE-ERAPSP------------- 286

  Fly  1207 PVEAKASVSLHTQALTTLENIISRL-RD---LDEGRLTPPSTPQRLPRSSPASPAASKKNKRQQS 1267
            |||.........|.......:..|| ||   :|.|..  ||....|.........|.:|.||.::
  Rat   287 PVEVGEPREFVLQPAPQGRAVRCRLTRDKKGMDRGMY--PSYFLHLDTEKKVFLLAGRKRKRSKT 349

  Fly  1268 NSPIRHILNSPLLNRRQRKKQSIIES--SDDEGNQTN--GSGEESNNAGNGKQYRDLETFQKAQL 1328
               ..::::|...| ..|..::.|..  |:..||:..  .:|:.....|.|    |:|:     |
  Rat   350 ---ANYLISSDPTN-LSRGGENFIGKLRSNLLGNRFTVFDNGQNPQRGGGG----DVES-----L 401

  Fly  1329 RQKLKRGKIEPN---------------GSASCANPAPVRRE------------------FVMHNK 1360
            ||:|.....|.|               |..|.....|:|..                  ..:|||
  Rat   402 RQELAAVVYETNVLGFRGPRRMTVIIPGMNSDNERVPIRPRNSSDGLLVRWQNKTLESLIELHNK 466

  Fly  1361 APMWNEMSQVYQLDFGGRVTQESAKNFQIEFRGKQ---VMQFGRIDGNAYTLDFQYPFSALQAFA 1422
            .|:|||.|..|.|:|.|||||.|.|||||......   |:||||:..:|:|||::||..||||||
  Rat   467 PPIWNEDSGSYTLNFQGRVTQASVKNFQIVHADDPDYIVLQFGRVAEDAFTLDYRYPLCALQAFA 531

  Fly  1423 VALANVTQRL 1432
            :||::...:|
  Rat   532 IALSSFDGKL 541

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
TuspNP_001263014.1 WD40 51..>295 CDD:225201
WD40 81..359 CDD:295369
WD40 repeat 91..126 CDD:293791
WD40 repeat 132..168 CDD:293791
WD40 repeat 173..208 CDD:293791
WD40 repeat 216..263 CDD:293791
WD40 repeat 270..333 CDD:293791
Tub <588..>644 CDD:279506
Tub <1355..1426 CDD:279506 40/73 (55%)
Tulp1XP_006256279.1 SWIRM-assoc_2 <18..86 CDD:293105 15/71 (21%)
Tub 300..537 CDD:279506 76/251 (30%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1445357at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.920

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