DRSC/TRiP Functional Genomics Resources

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Protein Alignment dsd and LanB1

DIOPT Version :9

Sequence 1:NP_001263013.1 Gene:dsd / 43315 FlyBaseID:FBgn0039528 Length:1323 Species:Drosophila melanogaster
Sequence 2:NP_476618.1 Gene:LanB1 / 34068 FlyBaseID:FBgn0261800 Length:1788 Species:Drosophila melanogaster


Alignment Length:1174 Identity:226/1174 - (19%)
Similarity:336/1174 - (28%) Gaps:451/1174 - (38%)


- Green bases have known domain annotations that are detailed below.


  Fly    52 NCTAHGGRC-----------QNDGQCQEDGQCLCADGWQGPECQFCGGKVRMYHPMGTIHDGWGN 105
            :|..|..:|           ..||...  |:|.|....:|..|:.|             .|.:.:
  Fly   289 SCYGHASQCLPLDPAFSQADNEDGMVH--GRCECTHNTKGMNCEEC-------------EDFFND 338

  Fly   106 YSVSVKCSWLIDARHPHWNRRHNTNPSRTANIRIHLREFATECGWDHLYIYDGDSVDSPLLAVF- 169
                  ..|     .|.:.::  ||..:......|    |..|.:|.              ||| 
  Fly   339 ------LPW-----KPAFGKK--TNACKKCECNDH----AVSCHFDE--------------AVFT 372

  Fly   170 -SGLM-----------YRGNFSIRRVPQVIATSGTALVHFFSDDAYNMSGFNLTYKMNSC-PSDS 221
             ||.:           .||......:|           :|:.|...:::...:      | |.|.
  Fly   373 ASGFVSGGVCDNCLHNTRGQHCEECMP-----------YFYRDPEQDITSERV------CQPCDC 420

  Fly   222 DEVECSGHGKCRD----------GDCICDPMYRGEACN----------------IAACPNNCFES 260
            |....|..|.|..          |.|.|.....|..||                ...|..|...:
  Fly   421 DPQGSSDDGICDSLNELEEGAVAGACHCKAFVTGRRCNQCKDGYWNLQSDNPEGCEPCTCNPLGT 485

  Fly   261 KNQGHCRLDQERCSCYEGFAGDDCSQI--SAHGAWSTVHPKHSPAPAG----SASHGATIWRDTL 319
            .|...|.:....|.|.:...|.||:|.  ..:|.        |.:|.|    :...|.: :.:..
  Fly   486 LNNSGCVMRTGECKCKKYVTGKDCNQCMPETYGL--------SESPEGCSLCNCDAGGS-YDNYC 541

  Fly   320 HIVGGESYGR----GKLMS------------------------TYDFNGNVWETVHPEDGS---- 352
            .::.|:...|    |:..|                        :|..|||........|||    
  Fly   542 DVISGQCRCRPHMTGRSCSQPKQNYFIPLLPEVHEAEVVDECISYGANGNCSLVAETPDGSFTGI 606

  Fly   353 ---EVPDKRYGASTVMYGD--KIFMYGGVVKGHGISNELW--AFDVSARTWANISVRADPSCNAT 410
               .||:......||  ||  :...|..|::....|...|  ||....|     ..:.||.    
  Fly   607 GFTRVPENSELVFTV--GDIPRSMPYDAVIRYQSTSRGDWENAFITLVR-----PDQVDPE---- 660

  Fly   411 GGTTAMCGPLHVVGHTATLVPGYGDKNNYQYMVVIFGHSPNYGYLNTVQEFNFASREWRIVPTTG 475
            ||    ||.|.....:.|.:|                             |:...|..::|....
  Fly   661 GG----CGELAAATSSETRIP-----------------------------FSLPDRSRQVVALNE 692

  Fly   476 YVVKGGYGHSAAYDFLTEKVYVYGGIVSESESSQVLSSRLYAYEPATRVWSLLSAAPSARLL-HT 539
            ..::.|            |||.:               |:|.......|.|     |:|.:| .:
  Fly   693 VCLEAG------------KVYKF---------------RIYFERKRHDVDS-----PTATILVDS 725

  Fly   540 ANFVNQ-GLMMVFGGNTHNDTSQSYGAKCYSQDLLVYDVYCDSWHYHPMPGHLQADLARFGHS-- 601
            ...:.: .:..:|.|:...|..:....| |:....:||:   ::...|...:|...|:.|.|.  
  Fly   726 LTLIPRIDVTPIFQGSVLADIRKKDYEK-YNCKSSLYDM---NYKSDPKCQNLDNILSVFVHDGA 786

  Fly   602 -----------SVVFEESLYIYGGFNGQLLNDMLRYQ-----PG--------------------- 629
                       |.|.|.:    ||: .|...:::..|     ||                     
  Fly   787 SMCNCNPTGSLSKVCESN----GGY-CQCKPNVVGRQCDQCAPGTYGFGPEGCKACDCNSIGSKD 846

  Fly   630 -YCSYYTKQEKCTAARPGVKC------IWDVQKMRCIAITQVQRSAIYGREQYDYVACPSKSRLT 687
             ||...|.|.:|.....|.:|      .|:..:.|                     .|.......
  Fly   847 KYCDLITGQCQCVPNTYGRECNQCQPGYWNFPECR---------------------VCQCNGHAA 890

  Fly   688 LTSELLHDVHRCQELA---SCQSCVSTAFGCTYCGNGV-CSKERCRETTSMASVFFESSTQMAVS 748
            ....:......||:..   ||.||:...:|....|:.: |...||.||.:.              
  Fly   891 TCDPIQGTCIDCQDSTTGYSCDSCLDGYYGNPLFGSEIGCRPCRCPETVAS-------------- 941

  Fly   749 TASPPLNAKHLDSCPISEEYLVSSVCDQLHNCRACSANLACRWDSEHNRCKSYTSYGGLALNRTQ 813
                  ...|.|.|.:          |..:|...|.    |:.....:||               
  Fly   942 ------GLAHADGCSL----------DTRNNNMLCH----CQEGYSGSRC--------------- 971

  Fly   814 DEVACSPSCASLTNCQNCTEDECIWCQNEQRCVDRNAYTASFPYGQCREWTTFTAKCRSAPIQST 878
             |:.......:..|...|::.||      ...||      .:..|.|...|....||        
  Fly   972 -EICADNFFGNPDNGGTCSKCEC------SNNVD------LYDTGNCDRQTGACLKC-------- 1015

  Fly   879 ALAVGSTTALSSAQC--GYY-----NSCQMCLDDPACGWCD-NGSNTGLGRC-----------VV 924
               :..||......|  |::     .:||.|       .|| .|:|..:..|           .|
  Fly  1016 ---LYQTTGDHCELCKDGFFGDALQQNCQQC-------ECDFLGTNNTIAHCDRFTGQCPCLPNV 1070

  Fly   925 GGALAPYDDTECALKHWFFTS---CPRCNCNG----HSYCNDQQ-HCEQPCNNLTTGAHCEKCRT 981
            .|...    .:||..||...|   |..|||:.    |..||... .|:  |.....|..|.:|:.
  Fly  1071 QGVRC----DQCAENHWKIASGEGCESCNCDPIGALHEQCNSYTGQCQ--CKPGFGGRACNQCQA 1129

  Fly   982 GYWGNPINGGKCQRCDCNGQGV---YCHPDTGKCFCTTKGIVGDHCEKCDSQNHY----HGDPLK 1039
            .|||||  ..|||.|:|:..|.   .|..:||.|.| .:||.|..|.:| ::.:.    |..|. 
  Fly  1130 HYWGNP--NEKCQPCECDQFGAADFQCDRETGNCVC-HEGIGGYKCNEC-ARGYIGQFPHCSPC- 1189

  Fly  1040 GSCY 1043
            |.|:
  Fly  1190 GECF 1193

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
dsdNP_001263013.1 CUB 86..212 CDD:238001 20/138 (14%)
PLN02153 290..582 CDD:177814 59/336 (18%)
KELCH repeat 308..349 CDD:276965 9/68 (13%)
Kelch_5 355..391 CDD:290565 11/39 (28%)
KELCH repeat 358..420 CDD:276965 17/65 (26%)
KELCH repeat 424..474 CDD:276965 5/49 (10%)
KELCH repeat 482..531 CDD:276965 7/48 (15%)
KELCH repeat 535..588 CDD:276965 9/54 (17%)
PSI 821..870 CDD:279745 9/48 (19%)
EGF_Lam 948..994 CDD:238012 17/50 (34%)
EGF_Lam 995..1040 CDD:238012 15/51 (29%)
LanB1NP_476618.1 Laminin_N 63..286 CDD:278484
EGF_Lam 287..343 CDD:238012 13/79 (16%)
Laminin_EGF 355..415 CDD:278482 14/94 (15%)
Laminin_EGF 418..475 CDD:278482 11/56 (20%)
EGF_Lam 477..526 CDD:238012 13/56 (23%)
EGF_Lam 529..567 CDD:214543 5/38 (13%)
EGF_Lam 789..834 CDD:214543 9/49 (18%)
Laminin_EGF 837..885 CDD:278482 10/68 (15%)
Laminin_EGF 883..930 CDD:278482 9/46 (20%)
Laminin_EGF 933..988 CDD:278482 15/104 (14%)
Laminin_EGF 991..1043 CDD:278482 15/74 (20%)
Laminin_EGF 1043..1091 CDD:278482 13/58 (22%)
Laminin_EGF 1094..1142 CDD:278482 19/51 (37%)
Laminin_EGF 1142..1190 CDD:278482 15/50 (30%)
COG6 1212..>1398 CDD:303003
TelA 1439..1782 CDD:226371
ApoLp-III_like 1545..1702 CDD:304399
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45445161
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR10574
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
22.030

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