DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment dsd and atrn

DIOPT Version :9

Sequence 1:NP_001263013.1 Gene:dsd / 43315 FlyBaseID:FBgn0039528 Length:1323 Species:Drosophila melanogaster
Sequence 2:XP_002936412.3 Gene:atrn / 100486843 XenbaseID:XB-GENE-953934 Length:1352 Species:Xenopus tropicalis


Alignment Length:1480 Identity:514/1480 - (34%)
Similarity:734/1480 - (49%) Gaps:322/1480 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    27 RKCLLLLTLLLFHGCFSGLHRAAAFNCTAHGGRCQN---DGQCQ-EDGQCLCADGWQGPECQFCG 87
            |:.|:.:.||:.....||         || |..|:.   :|.|| ..|||.|..||.|.:||.||
 Frog    10 RRWLVAVLLLMAGTRISG---------TA-GKECEKPCVNGMCQPSTGQCACDPGWTGEQCQHCG 64

  Fly    88 GKVRMYHPMGTIHDGWGNYSVSVKCSWLIDARHPHWNRRHNTNPSRTANIRIHLREFATECGWDH 152
            |:..:..|.|.:.||.|||....||:|||:.             |....:|:....|||||.|||
 Frog    65 GRFMLTGPSGFVTDGPGNYKYKTKCTWLIEG-------------SENTVLRLRFNHFATECSWDH 116

  Fly   153 LYIYDGDSVDSPLLAVFSGLMYRGNFSIRRVPQVIATSGTALVHFFSDDAYNMSGFNLTYKMNSC 217
            ||:|||||:.:||:|.||||:.....|...||:|..|||.||:|||||.|||::|||::|.:::|
 Frog   117 LYVYDGDSIYAPLVAAFSGLIVPEQESNNSVPEVAITSGYALLHFFSDAAYNLTGFNISYNVDAC 181

  Fly   218 PSDSDEVECSGHGKCR---DGD--CICDPMYRGEACNIAACPNNC-FESKNQGHCRLDQER-CSC 275
            |::     |||.|.|.   ||:  |.|...::||||:|..|.:|| |.:  .|.|..:..: |.|
 Frog   182 PNN-----CSGRGDCTQNPDGNVYCDCAEHWKGEACDIPYCLDNCGFPT--HGICDFNNTKSCIC 239

  Fly   276 YEGFAGDDCS-QISAHGA-W---STVHPKHSPAPAGSASHGATIWRDTLHIVGGESYGRG--KLM 333
            .:|:.|..|. .|.|:.: |   ..:|||     ...|||.|.:..|.:.||||..:...  :::
 Frog   240 RDGWQGPSCDVSIPANESFWVREENLHPK-----LARASHRAVVVDDVMWIVGGYMFNHSDYQMV 299

  Fly   334 STYDFNGNVWETVHPEDGSEVPDKRYGASTVMYGDKIFMYGGVVKGHG-ISNELWAFDVSARTWA 397
            ..||...:.|.:::....|.|  .|||.|...|.||::||||.:...| ::|:|:.|.:..::|.
 Frog   300 MAYDLPSHKWLSLNNSVNSVV--VRYGHSLAPYKDKLYMYGGKIDATGNVTNQLYVFHIHNQSWV 362

  Fly   398 NISVRADPSCNATGGTTAMCGPLHVVGHTATLVPGYGDKNNYQYMVVIFGHSPNYGYLNTVQEFN 462
            .|..:|...             ..||||:|.:|.   .|:....|:|.|||.|.|||::::|:::
 Frog   363 QILPKAKDQ-------------YAVVGHSAHIVT---LKDGSVVMLVFFGHCPLYGYISSIQQYS 411

  Fly   463 FASREWRIVPTTGYVVKGGYGHSAAYDFLTEKVYVYGGIVSESESSQVLSSRLYAYEPATRVWSL 527
            ..:..|.||.|.|.:|:||||||:.||..:..:|::||..:.:.:...|:..||.|....:.|.:
 Frog   412 LDTNLWEIVQTHGALVQGGYGHSSVYDEKSRSIYIHGGYKAFTANKYRLADDLYRYSVDNQTWMI 476

  Fly   528 LSAAPSARLLHTANFVNQGLMMVFGGNTHNDTSQSYGAKCYSQDLLVYDVYCDSWHY--HPMPGH 590
            |..:.|.|.||||..:: |.|:|||||||||||.|:||||:|.|.:.||..||.|..  |||   
 Frog   477 LKDSQSFRYLHTAVIIS-GTMLVFGGNTHNDTSMSHGAKCFSSDFMAYDFACDYWSVLPHPM--- 537

  Fly   591 LQADLA--RFGHSSVVFEESLYIYGGFNGQLLNDMLRYQPGYCSYYTKQEKCTAARPGVKCIWDV 653
            .|.|::  |||||:|:...::|::||||..||:|:|.:.|..|..|..:..|..|.||::|:|:.
 Frog   538 FQYDVSVDRFGHSAVLRNGTMYVFGGFNSLLLSDVLTFTPRSCETYKSENACMVAEPGIRCVWNA 602

  Fly   654 QKMRCIAITQVQRSAIYGREQYDYVACPSKSRLTLTSELLHDVHRCQELASCQSCVSTAFGCTYC 718
            ..:.|.:.....      .||.:.::||:|:        :.|..:|.:...|.||...:.||.:|
 Frog   603 SLLLCSSWENAT------PEQEELISCPNKT--------IADNEKCDQYTDCFSCTVNSHGCQWC 653

  Fly   719 GNGVCSKERCRETTSMASVFFESSTQMAVSTASPPLNAKHLDSCPISEEYLVSSVCDQLHNCRAC 783
                  .:.|....|..:|.     |.|:|.         .:.||.:..   ...|::..:|::|
 Frog   654 ------NDHCISLNSNCTVL-----QGAISV---------YEQCPKNNP---GFYCNKKTSCKSC 695

  Fly   784 SANLACRWDSEHNRC-------------------------------------------------- 798
            :.:..|:|:.::..|                                                  
 Frog   696 AMDQNCQWEPKNQECIGLPENICGANWHLVGSSCFRITSAKDNYDNAKLACRNQNAYLASLTSQK 760

  Fly   799 -------------------------KSYTSY---------------------------------- 804
                                     |...||                                  
 Frog   761 EVEFVIKHLQRLQPKTDLTPWVGLRKINVSYWCWEDMSPFSNTTLQWQQGEPSDAGFCGYLAEPS 825

  Fly   805 -GGL----ALNRTQDEVA----------CSPSCASLTNCQNCT--EDECIWCQNEQRCVDRNAYT 852
             |||    .:::....|.          |...|||..:|..||  ..||:||.|.::|||.|||.
 Frog   826 VGGLKAATCIHQINGSVCERPANYSAKQCRTPCASRGSCGECTSGSSECMWCSNMKQCVDSNAYV 890

  Fly   853 ASFPYGQCREWTTFTAKCRSAPIQSTALAVGSTTALSSAQCGYYNSCQMCLDDPACGWCDNGSNT 917
            ||||:|||.||.|.:    :.|.::               |..|.:|..||:.|.||||.:.|||
 Frog   891 ASFPFGQCMEWYTMS----TCPPEN---------------CSGYRTCAQCLEHPGCGWCTDPSNT 936

  Fly   918 GLGRCVVGGALAP---------------YDDTECALK---HWFFTSCPRCNCNGHSYCNDQQHCE 964
            |.|:|:.|....|               .:.:.|..:   :|.|..||.|.|||||.|.::..||
 Frog   937 GKGQCMEGSHRGPMKMPNSSHVTNTTPVLNVSMCPAENHYNWSFIMCPACQCNGHSKCVNESICE 1001

  Fly   965 QPCNNLTTGAHCEKCRTGYWGNPINGGKCQRCDCNGQGVYCHPDTGKCFCTTKGIVGDHCEKCDS 1029
            : |.|||||.:||.|.:|::|:|.|||.||.|.|||....|:.:||||||||||:.|:.|:.|:.
 Frog  1002 K-CENLTTGKNCESCISGFYGDPTNGGSCQPCKCNGHASMCNTNTGKCFCTTKGVKGEECQLCEV 1065

  Fly  1030 QNHYHGDPLKGSCYYELTIDYQFTFNLSKKEDRHFTQINFRNSPGKPEIDADFTITCSVPAKMDI 1094
            :|.|.|:||||:|||.|.|||||||:||:::||::|.|||..:|.:...|.|..|..|....::|
 Frog  1066 ENRYQGNPLKGTCYYSLLIDYQFTFSLSQEDDRYYTAINFVATPEEQNRDLDMFINASKNFNLNI 1130

  Fly  1095 -------SVKRAGSPDMLILVGVNCSTFRHRFPKTDYQFGHSPDDNSSLTTFYVFVHDFQPPIWI 1152
                   :..:||. ::.|:...|...::..|....:.|.::|:     .||:|:|.:|..||.|
 Frog  1131 TWATSFTAGTQAGE-EIPIISKTNIKEYKDSFSNEKFDFHNNPN-----ITFFVYVSNFTWPIKI 1189

  Fly  1153 QIAFSQYPK-LNLQQFFITFSSCFLLLLLMAAVLWKIKQKYDMFRRRQRLFVEMEQMASRPFSQV 1216
            ||||||:.. ::|.|||:||.||||.|||:|||:|||||.....|||::|..||:|||||||:.|
 Frog  1190 QIAFSQHSNFMDLVQFFVTFFSCFLSLLLVAAVVWKIKQSCWASRRREQLIREMQQMASRPFASV 1254

  Fly  1217 LVDIE-NRESIDLSLTLEGIGHLSKKRKKECPSPIALEPCSGNRAAVLSLLVRLPTGGLSQAPSG 1280
            .|.:| :.|..||      ||    ...|..|.|||||||.||:|||||:.||||.|.....|.|
 Frog  1255 NVALETDEEPPDL------IG----GSIKTVPKPIALEPCCGNKAAVLSIFVRLPRGLGGIPPPG 1309

  Fly  1281 QSAGLAVASALVTLGNPRRPSIDQHP---KEPKSKRKQSQH-----PDSC 1322
            || |||||||||.:.       .|.|   ||.....:..:|     |.:|
 Frog  1310 QS-GLAVASALVDIS-------QQMPLAYKEKSGAARNRKHQPPAQPGTC 1351

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
dsdNP_001263013.1 CUB 86..212 CDD:238001 59/125 (47%)
PLN02153 290..582 CDD:177814 106/298 (36%)
KELCH repeat 308..349 CDD:276965 12/42 (29%)
Kelch_5 355..391 CDD:290565 15/36 (42%)
KELCH repeat 358..420 CDD:276965 18/62 (29%)
KELCH repeat 424..474 CDD:276965 18/49 (37%)
KELCH repeat 482..531 CDD:276965 15/48 (31%)
KELCH repeat 535..588 CDD:276965 32/54 (59%)
PSI 821..870 CDD:279745 27/50 (54%)
EGF_Lam 948..994 CDD:238012 24/45 (53%)
EGF_Lam 995..1040 CDD:238012 23/44 (52%)
atrnXP_002936412.3 CUB 63..176 CDD:238001 59/125 (47%)
PHA03098 <213..427 CDD:222983 72/238 (30%)
KELCH repeat 271..315 CDD:276965 12/43 (28%)
KELCH repeat 322..366 CDD:276965 17/43 (40%)
KELCH repeat 377..420 CDD:276965 15/45 (33%)
KELCH repeat 431..480 CDD:276965 15/48 (31%)
Kelch_3 444..492 CDD:404319 15/47 (32%)
KELCH repeat 484..543 CDD:276965 35/62 (56%)
CLECT 718..845 CDD:413318 7/126 (6%)
PSI 857..908 CDD:396154 27/54 (50%)
EGF_Lam 985..1030 CDD:238012 24/45 (53%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 314 1.000 Domainoid score I1279
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 1 1.000 - - H22542
Inparanoid 1 1.050 653 1.000 Inparanoid score I778
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D32816at33208
OrthoFinder 1 1.000 - - FOG0003093
OrthoInspector 1 1.000 - - otm48705
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2833
SonicParanoid 1 1.000 - - X2068
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
88.090

Return to query results.
Submit another query.