DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG13978 and Pigo

DIOPT Version :9

Sequence 1:NP_651562.2 Gene:CG13978 / 43303 FlyBaseID:FBgn0039518 Length:898 Species:Drosophila melanogaster
Sequence 2:XP_038966909.1 Gene:Pigo / 313341 RGDID:1309498 Length:1128 Species:Rattus norvegicus


Alignment Length:642 Identity:131/642 - (20%)
Similarity:213/642 - (33%) Gaps:191/642 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly    47 RLVVFVTDGLR-----------------AATFLANNGSDVPDLKDIYRQQGRIGISRTCAPTMTR 94
            |:|:.:.|.||                 :..||...||    ||.|...|               
  Rat    90 RVVLVLIDALRFDFAQPQCSHVPGEPPVSVPFLGKLGS----LKRILEVQ--------------- 135

  Fly    95 PGHIAIFAGFHEDPAASLMHL-CYNPGDFDTVFNRSRNMIGWAHSYIVGYFVK-LSHGGAPLRFD 157
            |.|..::....:.|..::..| ....|...|..:...|..  :|:.:....:| |:..|..:.| 
  Rat   136 PHHARLYQSQVDPPTTTMQRLKALTTGSLPTFIDAGSNFA--SHAIVEDNLIKQLTSAGKRVVF- 197

  Fly   158 SYMERDLPEKLTCDKW------AFDKVENF-------LRNVDN-VRE----------WRNYKPAV 198
                      :..|.|      ||.:...|       |..||| :.|          |     .|
  Rat   198 ----------MGDDTWKDLFPGAFSQAFFFSSFNVRDLHTVDNGILEHLYPTMDSGAW-----DV 247

  Fly   199 FFVYLADMDIAAHRFKPLSKKFFAKLQYTQRGIRNTYELFERVFNDSRTAYLMTSDHGMNNEGAH 263
            ...:...:|...|:..|...:...||....:.|:.   |.||:.||  |..::..||||...|.|
  Rat   248 LIAHFLGVDHCGHKHGPHHPEMAKKLSQMDQVIQG---LIERLEND--TLLVVAGDHGMTMNGDH 307

  Fly   264 GSGSPLEVETPLFMWGAGVKRDEIDAEANFPEKPNISQVDQTQLAPLMSSLIGLPPPKNNLA--- 325
            |..|.|||...||::...|....:.     ||:|.:  :.|..|.|.::.|:|||.|..|:.   
  Rat   308 GGDSELEVSAALFLYSPTVLFPSVP-----PEEPEV--IPQISLVPTLALLLGLPIPFGNIGEVM 365

  Fly   326 --LMPVGYLNVSDEYQAVALHLNVLQLLSQAEILIGRHEKAIF-YKWLPKFKELHIGVIDQYAAQ 387
              |...|....|......|.|.:...|...:.:.|...:.:.| :.:....::||:..:.:....
  Rat   366 AELFSGGSGGGSSRGDGDASHPDSPALAQVSALYINAQQVSRFLHTYSAATQDLHVKELRRLQEL 430

  Fly   388 FDILKSEGNLTDAMEFCKEYGKLAKKCLTYYNQYYQTPLIVANSMSYMIWFYCLLLQLTRLSKKE 452
            |.  |:.......::..:|    |:..|:.....:|..|..|.::....|        .|.|   
  Rat   431 FS--KASARYQHLLQHPRE----AEAALSSLTADFQQFLRGARAVCIESW--------ARFS--- 478

  Fly   453 KMQRRGFMTVSTLILAMIGILLIAMMELQKVPHIAAFYLILPVGMLIMAQAERPVRGYWIFHPLW 517
                        |:....|..|:|          ||..|.|....|.:|..       ::|.|| 
  Rat   479 ------------LVRMAGGAALLA----------AACLLCLLASQLAVAPG-------FLFRPL- 513

  Fly   518 NFGFILVPAVLIMSMTFIIRHLWVLY-GISVLLNNR-------RALRKPSIKLFIW--------- 565
                :|:|....::.|       :|| |:||...::       ......|:..|:|         
  Rat   514 ----LLIPVAWGLTWT-------LLYAGVSVTTGSKLDPVVLGAVAAAGSLLPFLWKAWLSWGSK 567

  Fly   566 -------------LSLALIVTAILFMEQRTIKGLKTIPVKDYHVLYVSMVLAIIRPL 609
                         |:|.||..|..|.:...:...:..|     .|..|::|.::..|
  Rat   568 RPLAPLLPVPRPVLALLLIRLATFFSDSFVVAEARATP-----FLLGSLILFLVAQL 619

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG13978NP_651562.2 GPI_EPT_1 42..328 CDD:293744 76/328 (23%)
PigN 414..839 CDD:282796 42/226 (19%)
PigoXP_038966909.1 GPI_EPT_3 85..365 CDD:293747 75/323 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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