DRSC/TRiP Functional Genomics Resources

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Protein Alignment side and nectin1b

DIOPT Version :10

Sequence 1:NP_001247334.1 Gene:side / 43300 FlyBaseID:FBgn0016061 Length:986 Species:Drosophila melanogaster
Sequence 2:XP_073785262.1 Gene:nectin1b / 557665 ZFINID:ZDB-GENE-090224-2 Length:594 Species:Danio rerio


Alignment Length:494 Identity:114/494 - (23%)
Similarity:173/494 - (35%) Gaps:151/494 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   223 GKEISQMAGPFREGY---ELFLCCQVRGGRPPPK---VTWWR--DDTE--------LIGTS---- 267
            |...|....|.:.|:   .:.|.|....|:||.|   |||.:  :.|:        .:|.|    
Zfish    61 GNGQSVQTDPSKSGFVGDTVELKCLFINGKPPVKISQVTWQKLINGTKQNVAIANPALGVSVLTP 125

  Fly   268 --------HTSVEEGATVMVNQLLIGTTTRDFYGIRIECRA----------QGTRLVDPVRKDVT 314
                    |.:|.:.....:..     ||..|..:|:...|          .|.|     ...|.
Zfish   126 FKDRVSFKHPAVRQRTPSSLED-----TTIVFSSLRLSDEAAYICEYTTFPAGNR-----ENMVN 180

  Fly   315 VQVYLKPVRVKIATPNELLTAGQP---MPI-RCESWGSYPAAKITW--LLDGE----PIRNAEVT 369
            :.|:.:|| .|:...:..:.|..|   ||: .|.|....|.:.|.|  .|.||    ..||...|
Zfish   181 LTVFARPV-TKMTLTSPTIVARTPKRKMPVATCMSANGKPPSVIKWDTTLKGEATFQETRNPNGT 244

  Fly   370 VHSDKEDGNITTSILTLKVTSENDNAELTCRATNPWFSGGAIEDKRIIRVAYPPTVSVHLANEDP 434
            |       .:.::.:.|. :.|....:|||..|   :......|..|:.|.|.|.|.:.  ..|.
Zfish   245 V-------TVRSNYIVLP-SRETHRQKLTCIVT---YRSERFTDSVILNVQYEPEVKIE--GFDG 296

  Fly   435 SRLVTRAEGQNVTFKCRADARPPVTSYSW-FKNGMRMSGESTEIMHLT-----QLERESAGAYAC 493
            :..:.|   .||...|.|||.||||.|.| ..||...:  :.||.:.|     .:..|..|.|.|
Zfish   297 NWYLNR---PNVQLTCNADANPPVTVYQWKLLNGSLPN--NIEIKNNTLFFKGPVTYELGGTYVC 356

  Fly   494 GATNTEGETRSSSLTLKVQFSPRCKS--GTEQTSIGAVSLHSILVKCEVDADPPDSVRFSWTYNN 556
            .|||:.| |||..:.:.|...|..:.  |.....:|.|.:..::|                    
Zfish   357 EATNSIG-TRSGLVEVNVTEKPMAQGPPGGIFGILGVVVVAGLIV-------------------- 400

  Fly   557 TRNVSPVLNSRIQSNGLASTVTYL--------PQTDSELITLA--CW------ASNAVGRQTTPC 605
                           |:.:|:..:        .:||::||.:|  |.      .:.|..:..:|.
Zfish   401 ---------------GVVATICMVYRRGQKPRTETDNDLIAVADSCVTKPEAPGTEAPEKPESPT 450

  Fly   606 LVHILPANTPEAPKACELRNDTVLEVVCVAGSD--GGLS 642
            ...:.||:.|..|...:            .|||  |||:
Zfish   451 RTDLPPAHKPAPPPPKK------------KGSDMKGGLT 477

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sideNP_001247334.1 V-set 95..211 CDD:462230
Ig 211..301 CDD:472250 23/115 (20%)
Ig strand B 239..243 CDD:409353 1/3 (33%)
Ig strand C 253..257 CDD:409353 3/6 (50%)
Ig strand E 281..285 CDD:409353 0/3 (0%)
Ig strand F 295..300 CDD:409353 1/4 (25%)
Ig 326..408 CDD:472250 22/91 (24%)
Ig strand B 339..343 CDD:409353 2/4 (50%)
Ig strand C 353..357 CDD:409353 2/5 (40%)
Ig strand E 384..388 CDD:409353 1/3 (33%)
Ig strand F 396..401 CDD:409353 3/4 (75%)
Ig_2 442..511 CDD:464026 28/74 (38%)
FN3 <700..735 CDD:238020
nectin1bXP_073785262.1 None
Blue background indicates that the domain is not in the aligned region.

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