DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment side and fred

DIOPT Version :9

Sequence 1:NP_001247334.1 Gene:side / 43300 FlyBaseID:FBgn0016061 Length:986 Species:Drosophila melanogaster
Sequence 2:NP_608812.3 Gene:fred / 33613 FlyBaseID:FBgn0051774 Length:1447 Species:Drosophila melanogaster


Alignment Length:1239 Identity:230/1239 - (18%)
Similarity:373/1239 - (30%) Gaps:496/1239 - (40%)


- Green bases have known domain annotations that are detailed below.


  Fly    24 TTYWPRQT---------GNSKSKSNTNCKCNINTHR-------KSRTRCPDNGKTIWAVGFTLVL 72
            |.||.|.|         .....:.|:|.:.:....|       |:.:...|||:           
  Fly    49 TFYWARWTCCPTLFENVAIGDVQLNSNYRLDFRPSRGIYDLQIKNTSYNRDNGR----------- 102

  Fly    73 LTCLQQLKSVSADEESQDFQKNI----------PARLVWAALGKTVELPCDLTPPTSQDSVKLLL 127
            ..|..:.|...||...:.:...:          |..|..|...|.:||.|. :...|.|  .::.
  Fly   103 FECRIKAKGTGADVHQEFYNLTVLTAPHPPMVTPGNLAVATEEKPLELTCS-SIGGSPD--PMIT 164

  Fly   128 WFKDTTGIPLYSLDSRGGNVKLAPHAAIASDLGQRLFFSIGDNPKDSRLQINDVKPEDGGVYRCR 192
            |:::.:.:||.|...:||:                     .::..::.|||...:.:||..|:|.
  Fly   165 WYREGSTVPLQSYALKGGS---------------------KNHYTNATLQIVPRRADDGAKYKCV 208

  Fly   193 VDFFN-----------SPTRNFRHNLTLVVPPEEPRIFDAQGKEISQMAGPFREGYELFLCCQVR 246
            |  :|           |.|.|..:...:.|.|:.|  ...:...:::            |.|:|.
  Fly   209 V--WNRAMPEGHMLETSVTLNVNYYPRVEVGPQNP--LKVERDHVAK------------LDCRVD 257

  Fly   247 GGRPPPKVTWWRDDTELIGTSHTSVEEGATVMVNQLLIGTTTRDFYGI------RIECRAQGTRL 305
            .......|.|.|:                    .|.:..|.|...|.:      :..|.|. ..|
  Fly   258 AKPMVSNVRWSRN--------------------GQYVSATPTHTIYRVNRHHAGKYTCSAD-NGL 301

  Fly   306 VDPVRKDVTVQVYLKPVRVKIATPNELLTAGQPMPIRCESWGSYPAAKITWLLDGEPIRNAEVTV 370
            .....||:.:.|...|: |.|.:.......|:.:.|||....:.....:.||.:|.|        
  Fly   302 GKTGEKDIVLDVLYPPI-VFIESKTHEAEEGETVLIRCNVTANPSPINVEWLKEGAP-------- 357

  Fly   371 HSDKEDGNITTSILTLKVTSENDNAELTCRATN---PWFSGGAIEDKRIIRVAYPPTVSVHLANE 432
                 |...|..:|||............||:.|   |:.|      ||:..|. ..||::.:.:.
  Fly   358 -----DFRYTGELLTLGSVRAEHAGNYICRSVNIMQPFSS------KRVEGVG-NSTVALLVRHR 410

  Fly   433 DPSRLVTRAE-----GQNVTFKCRADARP--PVTSYSWFKNGMRMSGESTEIM------HLTQLE 484
            .....:|..:     |..||..|.|:. |  ||..|.||::.....|.:.:|:      .:.:..
  Fly   411 PGQAYITPNKPVVHVGNGVTLTCSANP-PGWPVPQYRWFRDMDGDIGNTQKILAQGPQYSIPKAH 474

  Fly   485 RESAGAYACGATNTEGETRSSSLTLKVQFSPR---------------------C----------- 517
            ..|.|.|.|.|.|..|..:.:::.|:|...|:                     |           
  Fly   475 LGSEGKYHCHAVNELGIGKIATIILEVHQPPQFLAKLQQHMTRRVGDVDYAVTCSAKGKPTPQIR 539

  Fly   518 --KSGTE---------------QTSIGAVSLHSIL------------------------------ 535
              |.|||               ....|.|::.|||                              
  Fly   540 WIKDGTEILPTRKMFDIRTTPTDAGGGVVAVQSILRFRGKARPNGNQLLPNDRGLYTCLYENDVN 604

  Fly   536 --------------------------------VKCEVDADP-PDSVRFSWTYNNTRNVSPV---- 563
                                            |.|.|.|.| |:   |.|.|.|  |.||:    
  Fly   605 SANSSMHLRIEHEPIVIHQYNKVAYDLRESAEVVCRVQAYPKPE---FQWQYGN--NPSPLTMSS 664

  Fly   564 -----LNSRIQSNGLAST---VTYLPQTD-SELITLACWASNAVGRQTTPCLVHILPANTPEAPK 619
                 :::|:::|.:.::   :.:|..:| .|.|   |.|.|.:.....|  :.:.|..:||.| 
  Fly   665 DGHYEISTRMENNDVYTSILRIAHLQHSDYGEYI---CRAVNPLDSIRAP--IRLQPKGSPEKP- 723

  Fly   620 ACELRNDTVLEVVCVAGSDGGLSQYFMLEVVGGDPLYSGDPGGSAGQGRGQFSEAIGLGDNEIST 684
                .|..:|||    |.:        ..|:...|.::|          |..|....:....::|
  Fly   724 ----TNLKILEV----GHN--------YAVLNWTPGFNG----------GFMSTKYLVSYRRVAT 762

  Fly   685 LNDQATS-------APIFRMQENSP-------QF--------RLNNLEPGREYQFLVYAVNAKGR 727
            ..:|..|       .|.:::..:|.       :|        :|..|:..:.|.|.|||:|:||.
  Fly   763 PREQTLSDCSGNGYIPSYQISSSSSNSNHEWIEFNCFKENPCKLAPLDQHQSYMFKVYALNSKGT 827

  Fly   728 S---------------EPPVVIE--------NVRVAA---QLGPYDESILSED------------ 754
            |               .||:.:.        .:.|||   .|....||:::.|            
  Fly   828 SGYSNEILATTKVSKIPPPLHVSYDPNSHVLGINVAATCLSLIAVVESLVTRDATVPMWEIVETL 892

  Fly   755 ---PTPAETT-------------HHGGG-------GVGGS---GSSSGLGTGASTGSGPEKQSTL 793
               |:.:|||             |:...       ||||.   |....:....:.|.||..:..|
  Fly   893 TLLPSGSETTFKEAIINHVSRPAHYTTATTSGRSLGVGGGSHLGEDRTMALAETAGPGPVVRVKL 957

  Fly   794 ---------------------------LILAAVVVIGAVVVTSIIVAGIVVV---CRHR------ 822
                                       :..:|:|.|....::.::..|::..   ||.:      
  Fly   958 CLRSNHEHCGAYANAEIGKSYMPHKSSMTTSALVAIIIASLSFVVFLGLLYAFCHCRRKHAAKKE 1022

  Fly   823 ----------------------------------PRP---PEPQEVRKSMRPARNDVPSMYIEED 850
                                              .||   .:||:.::...|     |..|....
  Fly  1023 SSSVGGGVGGGNANATANPGSTGAKEYDLDLDASRRPSLSQDPQQSQQQPPP-----PPPYYPTG 1082

  Fly   851 ELNELEEG---GGRAADIRARVAP-------PNSHLCGGGGMPMP-------GGVGSSGGAIVGV 898
            .|:..:.|   ||....:.|...|       ...|....|....|       |||..|||...|.
  Fly  1083 TLDSKDIGNGNGGMELTLTALHDPDEQLNMQQQQHHSNHGQYQQPKAILGIYGGVAGSGGNNSGG 1147

  Fly   899 AGPH 902
            ..||
  Fly  1148 QHPH 1151

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sideNP_001247334.1 V-set 95..211 CDD:284989 27/136 (20%)
IG_like 100..211 CDD:214653 25/121 (21%)
Ig 235..301 CDD:299845 11/71 (15%)
Ig 326..408 CDD:299845 18/84 (21%)
IG_like 329..407 CDD:214653 17/80 (21%)
IG_like 435..511 CDD:214653 22/88 (25%)
Ig_2 442..511 CDD:290606 21/81 (26%)
FN3 <700..735 CDD:238020 15/64 (23%)
fredNP_608812.3 Ig 29..126 CDD:299845 16/87 (18%)
IG_like 141..228 CDD:214653 24/112 (21%)
Ig 147..228 CDD:299845 22/106 (21%)
I-set 232..313 CDD:254352 18/115 (16%)
IGc2 250..302 CDD:197706 12/84 (14%)
IG_like 323..385 CDD:214653 15/74 (20%)
IGc2 330..385 CDD:197706 15/67 (22%)
Ig_2 416..501 CDD:290606 22/85 (26%)
IG_like 418..501 CDD:214653 21/83 (25%)
I-set 505..612 CDD:254352 11/106 (10%)
Ig 526..611 CDD:143165 10/84 (12%)
IG_like 633..715 CDD:214653 23/91 (25%)
Ig 635..713 CDD:143165 23/87 (26%)
FN3 720..838 CDD:238020 30/144 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3515
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
21.810

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