DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment side and rst

DIOPT Version :9

Sequence 1:NP_001247334.1 Gene:side / 43300 FlyBaseID:FBgn0016061 Length:986 Species:Drosophila melanogaster
Sequence 2:NP_001284835.1 Gene:rst / 31290 FlyBaseID:FBgn0003285 Length:764 Species:Drosophila melanogaster


Alignment Length:976 Identity:201/976 - (20%)
Similarity:312/976 - (31%) Gaps:367/976 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly   102 AALGKTVELPCDLTPPTSQDSVKLLLWFKDTTGIPLYSLDSRGGNVKLAPHAAIASDLGQRLFFS 166
            |.:|..|.|||.:.     :....|.|.||..|:.. |.|..|    ...:|.:.|         
  Fly    39 AVVGARVTLPCRVI-----NKQGTLQWTKDDFGLGT-SRDLSG----FERYAMVGS--------- 84

  Fly   167 IGDNPKDSRLQINDVKPEDGGVYRCRVDFFNSP-------TRNFRHNLTLVVPPEEPRIFDAQGK 224
              |...|..|.|..|..:|...|:|:|    ||       .|:....||::||||.|:|      
  Fly    85 --DEEGDYSLDIYPVMLDDDARYQCQV----SPGPEGQPAIRSTFAGLTVLVPPEAPKI------ 137

  Fly   225 EISQMAGPFREGYELFLCCQVRGGRPPPKVTWWRDDTELIGTSHTSVEEGATVMVNQLLIGTTTR 289
                                                                             
  Fly   138 ----------------------------------------------------------------- 137

  Fly   290 DFYGIRIECRAQGTRLVDPVRKDVTVQVYLKPVRVKIATPNELLTAGQPMPIRCESWGSYPAAKI 354
                      .||         ||   :|              .|..:.:.|.|.|.|..|||:|
  Fly   138 ----------TQG---------DV---IY--------------ATEDRKVEIECVSVGGKPAAEI 166

  Fly   355 TWL--LDGEPIRNAEVTVHSDKEDGNITT-SILTLKVTSENDNAELTCRATNPWFSGGAIEDKRI 416
            ||:  |......|.|.||....:....|. |:|.|....|:.|...:|:|.|.  :.......:|
  Fly   167 TWIDGLGNVLTDNIEYTVIPLPDQRRFTAKSVLRLTPKKEHHNTNFSCQAQNT--ADRTYRSAKI 229

  Fly   417 -IRVAYPPTVSVHLANEDP--------------------SRLVTRAEGQNVTFKCRADARPPVTS 460
             :.|.|.|.|.|::....|                    ||:|   |...|..:|||||.|....
  Fly   230 RVEVKYAPKVKVNVMGSLPGGAGGSVGGAGGGSVHMSTGSRIV---EHSQVRLECRADANPSDVR 291

  Fly   461 YSWFKNGMR-MSGESTEIMHLTQLERESAGAYACGATNTEGETRSSSLTLKVQFSP--RCKSGTE 522
            |.||.|... :.|:.||::......:.......|...|:.|::..|. ||.:.::|  |.:..:.
  Fly   292 YRWFINDEPIIGGQKTEMVIRNVTRKFHDAIVKCEVQNSVGKSEDSE-TLDISYAPSFRQRPQSM 355

  Fly   523 QTSIGAVSLHSILVKCEVDADP-PDSVRFSWTYNNTRNVSPVLNSRIQSNGLASTVTYLPQTDSE 586
            :..:|:|    :.:.||||::| |:.|   |..:.:..|.          |.::.:|:       
  Fly   356 EADVGSV----VSLTCEVDSNPQPEIV---WIQHPSDRVV----------GTSTNLTF------- 396

  Fly   587 LITLACWASNAVGRQTTPCLVHILPANTPEAPKACELRNDTVLEVVCVAGSDGGLSQYFMLEVVG 651
                                               .:.|:|.....|.|...|      ..|:..
  Fly   397 -----------------------------------SVSNETAGRYYCKANVPG------YAEISA 420

  Fly   652 GDPLY-SGDPGGSAGQGRGQFSEAIGL-GDNEISTLNDQATSAP-------IFRMQENSPQFRLN 707
            ...:| .|.|  :.|..|.|:    || ||.  :.:...|:|.|       .|..||.|.     
  Fly   421 DAYVYLKGSP--AIGSQRTQY----GLVGDT--ARIECFASSVPRARHVSWTFNGQEISS----- 472

  Fly   708 NLEPGREYQFLVYAVNAKGRSEPPVVIENVRVAAQLGPYDESILSEDPTPAETTHHGGGGVGGSG 772
              |.|.:|..||.||  .|..:..::|.:.: |...|.|:.:::::                   
  Fly   473 --ESGHDYSILVDAV--PGGVKSTLIIRDSQ-AYHYGKYNCTVVND------------------- 513

  Fly   773 SSSGLGTGASTGSGPEKQSTLLILAAVVVIGAVVVTSIIVAGIVVV----CRHRPRPPEPQEVRK 833
                .|...:......|:|..|::  .:|.|..||..::|..|:||    |:.|.:.| |.:|..
  Fly   514 ----YGNDVAEIQLQAKKSVSLLM--TIVGGISVVAFLLVLTILVVVYIKCKKRTKLP-PADVIS 571

  Fly   834 SMRPARNDVPSMYIEEDELN------ELEEGGGRA--ADIRARVAPPNSHL--C----GGGG--- 881
            ..:..:|...|..:|..:..      :::..||..  .|.....:||..:|  |    .|..   
  Fly   572 EHQITKNGGVSCKLEPGDRTSNYSDLKVDISGGYVPYGDYSTHYSPPPQYLTTCSTKSNGSSTIM 636

  Fly   882 ---------------------------MPMPGGVGSSGGAIVG-VAGPHHYISESFIQYAQPSLN 918
                                       :||.....||||::.| :.|......::.:    |||.
  Fly   637 QNNHQNQLQLQQQQQQSHHQHHTQTTTLPMTFLTNSSGGSLTGSIIGSREIRQDNGL----PSLQ 697

  Fly   919 GDVLLPLLVTSSQP---CSTNSTISSV-----VLAMPQAKLCPDP------------ASRNTAWP 963
            ...   ..|.||.|   ||..||.::.     |:......|..||            :|.::..|
  Fly   698 STT---ASVVSSSPNGSCSNQSTTAATTTTTHVVVPSSMALSVDPRYSAIYGNPYLRSSNSSLLP 759

  Fly   964 P 964
            |
  Fly   760 P 760

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sideNP_001247334.1 V-set 95..211 CDD:284989 30/115 (26%)
IG_like 100..211 CDD:214653 30/115 (26%)
Ig 235..301 CDD:299845 0/65 (0%)
Ig 326..408 CDD:299845 25/84 (30%)
IG_like 329..407 CDD:214653 25/80 (31%)
IG_like 435..511 CDD:214653 24/76 (32%)
Ig_2 442..511 CDD:290606 21/69 (30%)
FN3 <700..735 CDD:238020 9/34 (26%)
rstNP_001284835.1 IG_like 34..130 CDD:214653 30/115 (26%)
Ig 42..114 CDD:299845 26/96 (27%)
C2-set_2 135..225 CDD:285423 32/198 (16%)
Ig_3 265..329 CDD:290638 19/66 (29%)
I-set 346..420 CDD:254352 21/138 (15%)
Ig 360..425 CDD:299845 19/129 (15%)
Ig5_KIRREL3-like 428..524 CDD:143235 29/136 (21%)
IG_like 435..524 CDD:214653 26/127 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.910

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