DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG3339 and dhc-3

DIOPT Version :10

Sequence 1:NP_001036762.2 Gene:CG3339 / 43295 FlyBaseID:FBgn0039510 Length:4842 Species:Drosophila melanogaster
Sequence 2:NP_506272.3 Gene:dhc-3 / 179798 WormBaseID:WBGene00007154 Length:3275 Species:Caenorhabditis elegans


Alignment Length:3769 Identity:682/3769 - (18%)
Similarity:1286/3769 - (34%) Gaps:1197/3769 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   899 WRNYNDELVAGIFEQSRDLFARLQQSHGNLDAILASM----RRWSREPLHQRSLYGRNLLDLRHQ 959
            |:..    |..:.|:.:|         |.|:..|..:    :.|:||.. :..|.|..:  ...|
 Worm   100 WKGQ----VESLAEKLKD---------GGLETTLKEIKVLWKDWTREAA-KNYLAGEEI--SAPQ 148

  Fly   960 QDRVRLRLLQCDETKMLLNRLLIAN--FCLFFNYESQEFQLYSRDLSVQEFIREFPEEQRRQYNK 1022
            ..|...|....:.|:.:.|:|.:.|  ..:||. :.:|..|......:.|..|..||.: :|...
 Worm   149 IGRSPWRNTMAENTEKISNQLRLNNKIITMFFK-KYRERCLIDCSFLLSENGRTVPELE-KQLKD 211

  Fly  1023 YLASVDELICREVREAMRISLEYLYKEMTATATATTTPTAPPVDPGCSAGMARLVLQQITTPQAT 1087
            ::....::          :|.|:              |.|          :|.|:|.:       
 Worm   212 FVTHTKKI----------VSFEW--------------PMA----------VANLMLDE------- 235

  Fly  1088 STAGAGASGAPPTANDAPLFEVKLELTETEIRFSPAFDASVENNFQQIVEQLLLDIKQTCDCMPR 1152
                 |||..|            |.:|.|......|..|::......:|.:.:..:|...|...|
 Worm   236 -----GASWIP------------LFVTSTSHTVFNAVAATMARLLYDVVMENINRVKTFFDLDDR 283

  Fly  1153 IVADNAPSEDDEDDDTATVDYEQELRWE-----------PREDRAQELQERKKKDLELE-----Q 1201
            ........||:::     .||     |:           ||.|  .::..|...:..::     .
 Worm   284 AKLIIILKEDEKE-----FDY-----WQKVNILLGLCKIPRVD--HKIYPRMFTEAWIDVTNWFD 336

  Fly  1202 EQG---DPKPQAVQFNLLAAAKAYSQKMECTADGLEMLERAIRDALADTVAAASAYAAKFQAYAF 1263
            .|.   .|.||  .|.:|.:..:..::|      |...|:...|.:                   
 Worm   337 SQSIVFKPLPQ--PFEMLNSRISQVEQM------LISFEKDPDDVV------------------- 374

  Fly  1264 LWTQQSSEVLAACMQTAREQTHHVSAGGYAIMETFKKEIENYNEVHDAIDQCENRECINGWLALD 1328
            .|.:.:.|:|....|..|:.|                                  ..:.|::..|
 Worm   375 FWEKIAKEILEIREQVLRQST----------------------------------RILKGFIIYD 405

  Fly  1329 IKPLKYGLLNLACKWSHMCKKWLLRYVQGTLKELNAFIARGFETLQLHIARQDFATLLRVLAIMS 1393
            .:.:|...|:...:.....|..:|..:.|.    |..|...|......:.|.|....||.:   .
 Worm   406 SRDIKKRSLSKITELEEKAKSLILIRLIGK----NTGIREVFTQCSAKLFRNDVLVQLRNI---E 463

  Fly  1394 EIREREPYADNVFKPLKEIMGLLKTYNV--------EFEPQLLRGIEQLPQQWQQLKHSSTVKQE 1450
            |::...|...:..|    |:|  :||.|        :::.:....|.:|..:.:||.:       
 Worm   464 EVQNELPSIKDRIK----IVG--QTYKVYMEYFTMPDYDIRQFYEISRLGFKLEQLVN------- 515

  Fly  1451 ALQDTRFHQQQRVTALIGLHTCHLQHYARQFQKMPFFRVPCPQVYDVCDEVYLRLHRFRRQQRLY 1515
            .:.|...|::|.:|..:...|....:.....:|         :..| |.:.|....|....|::.
 Worm   516 FVWDRINHERQWITKQVSEQTSKNYYECEMIEK---------EWLD-CLKKYRSAVRINEVQKVQ 570

  Fly  1516 TRWARLLD----IQPPDPAT--------LQFCEVELRRVKQLWDFVRVI-----------ESCI- 1556
            .:...|.:    ::..|...        |....::..|:.::.:|...:           |||: 
 Worm   571 IKMGNLEERSAILKAKDEKLIGQRSLLGLLSSPIDCVRIAKVCEFFSKLSTLHFKTLLHHESCLR 635

  Fly  1557 -----VAWHATPWLLIDTDDMEHECKKFTRDLRTLDKCIREW-----APYVHIVGVLRELVASLR 1611
                 |..::   |:|:|:.::.|    ..||:.....|:|.     ...:.|..||.|....|.
 Worm   636 MRISDVDHNS---LVIETERLQSE----KNDLKEKAAVIKEHETTSKEALLKIEIVLAEFEKLLP 693

  Fly  1612 AITELQNPAITERHWMELMQLTKLSYKCNKSTRLAQLLTLQLQHHEEDIKNTVDRAIKEMTVTKV 1676
            .:..:...|:.:|||..::|.::.|.|...:..:::||.:......:..:....:|.||..:...
 Worm   694 VLGAISCQAMKDRHWKMILQDSETSVKVEGNPLVSELLEMNFIEKADKFEQVGAQAEKERVLETS 758

  Fly  1677 LDEIKATWAHLEFELEQHHTRPHIQLLKVSEELIETLDDNQMQL-----QNISTSKHIEYLLDKL 1736
            ::::|:.|....|...|            ..||:.|..:.|||.     |.|.:|.|...:||.:
 Worm   759 IEKMKSQWVTATFVTHQ------------GGELLTTELNVQMQAHLARSQTILSSPHAFSILDHI 811

  Fly  1737 THWQKVLGGIDTLIVNWFEVQRKWIYLECIFIGSADIRAQLPADAANFERIDEDFTALLAKVQEV 1801
            .||...|..::|.:..:.:...:|..:|.:| .:.||..|:|.:...|::|...:..:..::.|.
 Worm   812 RHWLDTLLNLNTFVHLYKQCDTRWRKIEGVF-STEDIAYQMPHEFRTFKKISLRWLHINNQITEE 875

  Fly  1802 RVVMQVVLRHDDVLAQLLQLQHRLAVCEKALNDYLETKRLAFPRFYFISAADLLDILSNGNNPQV 1866
            |.:::.:.....:..:|.:|:......|...:.||..||..|||.:.:|...:|.::.:...|..
 Worm   876 RPILEQMDLVQQLNLELSELEVLFGRMENGFHAYLRKKRAVFPRLFALSDELVLSLICDSREPAN 940

  Fly  1867 IDRHLIKLFDSILRLQYETNTP-NALGMHSKENDEYVPFVSFDPDQPAFIVCGGR-VELWLRAII 1929
            ...::..||.|:  ..::.||. ..:.:.:|.  |.:..|     :|..:....| ||.|:..:.
 Worm   941 CKSYIPLLFPSL--TTFDQNTKMEIISVSTKL--ETISLV-----KPVNVNLSKRHVEKWMHELD 996

  Fly  1930 QQMRSTLHELFRRALRVFGEK------PRELWLYDWPAQVALCCSQISWTADVNRSFGCMEEGYE 1988
            .|::.||    |..:|:..||      |.|..|.: |.|||....:|::|..:..|         
 Worm   997 SQIKYTL----RTRIRLLIEKMNYKLSPVETILNE-PIQVAAVYLKIAFTWQMENS--------- 1047

  Fly  1989 GVMKELHKRQIAQLNALINLLLGELSPGDRQKIMTICTID-----VHSRD--------------- 2033
              ||:         |:| .:|..||.         ||..|     :|..|               
 Worm  1048 --MKQ---------NSL-TILASELK---------ICIRDCQHAVLHKHDRWEFLPVLYHIYKSS 1091

  Fly  2034 --VVGKIIASKVDNSLAFQWQSQLRHRWDDDQAGSSSGRASTAISCGGGDEDCFANICDAEFRYA 2096
              :|.|::..:|.....::|.||||:.|..:......|..||                    ||.
 Worm  1092 THLVNKLMNEQVIFIDDYRWTSQLRYYWHLENVFIRVGTVST--------------------RYD 1136

  Fly  2097 YEYLGNTSRLVITPLTD---RCYITL--------TQSLRLRLAGATAGPAGTGKTETTKDLGRAL 2150
            ||..| ...::...|.|   :.:|.:        ...:.:.||...||               ||
 Worm  1137 YEVQG-VDCMIDNQLVDEAVKYFICMNHFGFNGFVNGMDVNLARQIAG---------------AL 1185

  Fly  2151 GVMVYVFNCSEQMDYKSCGNIYKGLAQTGAWGCFDEFNRICVEVLSVVAVQVKTIQEAIKMHKTQ 2215
            |....:.:..:::|   |..:.:|....|                ..|.::.|.::|..|..:..
 Worm  1186 GKPFAICDTEQEID---CKMLIEGALLFG----------------GTVFIEEKNLEELWKSTEKD 1231

  Fly  2216 FIFMGERISLEPSVGIFITMNPGYAGRTELPENLKTLFRPCAMIVPDFALICEIMLMAEGFQDAR 2280
             ::....:|           |..|...:|:..|...:|                 |::..||.||
 Worm  1232 -VYTCHSLS-----------NLKYHFESEITLNSSFMF-----------------LLSSSFQTAR 1267

  Fly  2281 LL--------------------------ARKFITLYTLCKELLSKQDHYDWGLRAI-KSVLVVAG 2318
            .|                          .:||        :::|..::| :|.|.: |:.|    
 Worm  1268 SLQFGNSSYNKVIDEKLSLNSIAHREKKVQKF--------QIISDFENY-FGSRGLWKNYL---- 1319

  Fly  2319 TLKRDDHSRPEDQVLMRALRDFNIPKIVTEDVPIFMGLIGDLFPALDVPRKRVFEFEKTIRRAVN 2383
                       :.::.|.|.:.|..:.:..:..||..|      .:.:.||.....||.::....
 Worm  1320 -----------EAMICRILENENAEQELVIENSIFKHL------NVSMNRKNKNLLEKLLQLGPL 1367

  Fly  2384 EIKLQPEEGFLMK----------------VVQLQELLDV--RHSVFIVGNAG-TGKTKIWQTLRE 2429
            :||..|......|                .|:.::|:::  .|.|.:|..|. |||::|      
 Worm  1368 KIKKSPTPSKTPKSSEAPRKEIDNDPTYIKVKTEDLINLLHNHQVVVVSGASLTGKSRI------ 1426

  Fly  2430 TYRIQKLKPVCHVLNPKALSNDELFGIVNPTTREWKD--GLFSSIMREQANMPPGNPKWIVLDGD 2492
               |.|...:      |:...:..:|:       |::  |...|:    .||...| ||||:||.
 Worm  1427 ---ISKAAKL------KSADVENEYGL-------WEEIQGFGESL----KNMRRPN-KWIVIDGC 1470

  Fly  2493 IDPMWIESLNTLMDDN------KILTLASNERI-----SLKREMRLLFEVGHLKAATPATVSRAG 2546
            :.....|.|:.|:::|      ::..:|.:||:     ||:.:::.|   ..:...|...|||..
 Worm  1471 MSRKTKEWLHRLINENTMFPWRELPIIALSERVIIETDSLESDIKSL---PMILLDTSEEVSRET 1532

  Fly  2547 ILYINPQDLGWSPYVSSWLETRVDMIERGILNALFEKYFPCLMQRQRDFRRITPITDMAMIQMTC 2611
            .|.|..|.             |:|.:.:......:.||.  |:::....:::.......:.:   
 Worm  1533 TLEITEQQ-------------RIDEVLKYYSEFKYRKYE--LIRKISGLKKLITTNSEKVFE--- 1579

  Fly  2612 HLLECLLDSDEGNADGRGRGSATGGAANPHSLHHGELSHEAMVMALETIFVYATVWSFGSAL--S 2674
            |||                                          :.::..:|::...||..  |
 Worm  1580 HLL------------------------------------------ITSLLSFASLRQLGSFFFKS 1602

  Fly  2675 QDVIIDWHRE--FHKWWIGEFKDIKLPSQGTVFDYQLNVQTLKFQ---------PWSELAAHQSL 2728
            :..::|::::  :...|....:.:::|.  ::| |.:::..|...         |.|:......|
 Worm  1603 ESKLLDFYKDVPYSAGWYTYNESMEIPP--SLF-YMIHLIGLLLNSDFIPLLVCPPSQEFYEFLL 1664

  Fly  2729 EGQIDSETPLQNVLISTAETIRLAYFLKLLIDRNLACMLVGNSGCGKGAIFRQLFGQYANDQELL 2793
            ..||:.:|       ....||.||...|:.|                              ||:.
 Worm  1665 RLQIELDT-------LGWHTITLAIDEKVTI------------------------------QEIK 1692

  Fly  2794 E-VAVSAATAGDSSHQQQSGNPAGAVVVRRKASSSATPLLTTVQATHFNFY-------TSSEIFQ 2850
            : |.:.:...|...|..:....|                     ...|||:       .|.|:..
 Worm  1693 QFVEICSIMFGGHQHHDKDIEDA---------------------QEGFNFFLIRGIENASVEVID 1736

  Fly  2851 KMLDRPLEKKSGRCYAPSGPKRRLIYFVNDLNMPEVDAYGTVQPHTIMRQFMDYRQWYDRQRLQL 2915
             .|....|:|                  ..:.|..|..|.....|..:|:|:....|.|      
 Worm  1737 -WLRHKFERK------------------QIMKMLFVTPYAVESFHPRIRRFLFQINWLD------ 1776

  Fly  2916 KDIRHCQFAACMNPTAGSFTIDPRLQRHFCV------FSVAPPGEDTLHHIYGSILSSHLESPSQ 2974
                       ::.|....|:.|....::.:      ..||...:...:.:..::|.:.:     
 Worm  1777 -----------VHGTDSQLTLFPLANYNYVLRNLTTDIKVADVSDSIQNQLIDAMLDARI----- 1825

  Fly  2975 GFTKEIRSIGSLLVRVGIALHRRVEYAFLPTALKFHYLFNLRDLTGIYQGLMNSVGAPASAGGGG 3039
                             ::|:.:|.              |||  |....||:.            
 Worm  1826 -----------------LSLYEKVN--------------NLR--TSEEYGLIR------------ 1845

  Fly  3040 ASGFGGTICSRPSELMRLYVHEAFRVYHDRLVDPYDIKSFKSSIRDIFKKDFEDFDEDFVFAEPL 3104
                 |.:....:||..:|                     ||:|:::..::..      :..:|:
 Worm  1846 -----GKMFVEAAELCFIY---------------------KSAIQELSARNKR------IRCDPV 1878

  Fly  3105 IYSHFAQSLVDQKYMPLKSWDSLYQLLIEAQASYNEVVGYMNLVLFEDAMIHVCRINRILESPRG 3169
            |.|.                                          .||. :|..:.:::::..|
 Worm  1879 ILSP------------------------------------------ADAR-NVNVLEKVIQTSYG 1900

  Fly  3170 NALLIGVGGSGKQTLARLAAF--ISSLNVSQIQIKRGFGLL-DMREEIGNLYMKV---GLKNLAS 3228
            :.|::     |..|...|.|.  ||.|....:...:|...: :.||.:.|:....   |...:..
 Worm  1901 HTLIV-----GNDTSKSLDAITVISELCKHLLFTNQGIKTIEEWRELMSNVLRDCLIDGKDTVLG 1960

  Fly  3229 VFLISDAQIPDESILMLINDLLASGEIPELFNDDQLDTITNGIRNEVKQSGTLDTKENCWRYFVE 3293
            |.:..|.:| .|:||:.:..:.....||..:       :|..:.:|..:..||:.| ..|.....
 Worm  1961 VHITPDDEI-FETILLDLTCICCFKLIPPRY-------LTRLMLSEFGEKHTLEGK-GIWEMIET 2016

  Fly  3294 KVRRL-LKVVLCFSPVGQTLRVRARKFPAIISRTAIDWFHEWPKSALESVSQKFLNEI-NGILEP 3356
            |:..| :.:||..|.....:....    .::|...:.|   |...:.....|:.|:|: |..|  
 Worm  2017 KLSALKISIVLKSSDFSWLINCHR----MLLSMLILIW---WRDPSKREQEQEVLDELHNSEL-- 2072

  Fly  3357 ALVPPIGCFMAYVHGTVNQISRIY--LQNEKRYNYTTPKTFLEYIFLYRKLLVDKNGEFAERIAR 3419
                       :....::||.::.  |.:.|..|....|  |:.:....||...|..|..:.:.:
 Worm  2073 -----------FSKQQIDQIMKVLDDLSDFKMINTRAEK--LKMVSTITKLAKKKREEVRKTMTK 2124

  Fly  3420 LQSGMSKLAECARQVDTLKHQLAIQEVQLAAKNAAADKLIVIVSAESEKVKRER-YIASEEEKRV 3483
            .:.||.|:.....||..::.:|...:.||...:.....|:..:..|:..|:..| .:|:.|.|..
 Worm  2125 YEKGMEKMKRAEEQVAGMQGELLRLQPQLVRTSIETSMLMSTIEKETIDVENAREVVAANENKAN 2189

  Fly  3484 RIIEEDVSIKTKMCEEDLRQAEPALVAAQAALNTLNKNNLTELKSFGSPPKAVVNVCAAVMVLLA 3548
            ....:..|:|.: .|.:|..|.|||.:|..||.|:.:::::.||:...||.||.....||.:||.
 Worm  2190 EAATKAQSLKAE-SEAELASAIPALESAVEALETMTQSDVSSLKTMRFPPYAVRLCMEAVCILLG 2253

  Fly  3549 SN--------GKIPRDRSWKASKLMMVRVDQFLNDLLNYNKDNIHPNIIETLQE-YLKDPEFNPD 3604
            ..        |::..| .|.:.:.::..: .||..:.::.:|.:....::.::| ||...||:|:
 Worm  2254 VKPAKITNEIGEVVND-YWVSGQKLLSDI-HFLAKIRSFARDTVSKKTVKLIREKYLSKEEFDPE 2316

  Fly  3605 KVVQKSVAAAGLCAWVINLHRYHQVFLIVGPKQQALQDSHQELLEARERLQYLKAKINNLEAKLA 3669
            .|.|.|:||.|||.||:.:..|:|:..||.||::.|:.:...:.:..::|:..:..:..:..||.
 Worm  2317 NVKQCSLAAEGLCRWVLAIDMYNQISKIVEPKRERLRKAEVLVKQHLKQLEVKRKALLKVTEKLQ 2381

  Fly  3670 EIQAEFENAVGEKQRCQREADKTAFTIDLAHRLVNGLANENVRWKE---------------SVQS 3719
            .:..:|.....:||..:.:.......::.|.|||..|:.|..:||.               ||.|
 Worm  2382 GLSDQFSQMCQKKQELESQISSCEVRMERAERLVQALSGEKDKWKNKITYITHEDSLSVPYSVGS 2446

  Fly  3720 LLA--KIGTLPGDILLISSFLSYVGCFTRRYREELQHKMWLPNFRKIDPHIPHTEGVD--TLALF 3780
            .||  ..|.||.|                :..:||:..|     |.:.|.:..|...|  ||.:.
 Worm  2447 SLALHVFGKLPID----------------QREKELRKTM-----RSLFPRLEVTIPCDLKTLVML 2490

  Fly  3781 SDDAQIAAWNNEGLPMDRMSTENATILQYSTRWPLMIDPQLQGIKWIKNRFGTDLVVLRLRQKGF 3845
            .:|           |:..::.:|.......:::..::...    ||.:        |.|      
 Worm  2491 VED-----------PICFVNDDNRAFEILQSKFEKIVVTN----KWTE--------VER------ 2526

  Fly  3846 LEALEKSISQGDTVLIEQIEESMDTVLEPLLSRALIKKGRY---------LRIGDKEIEFHASFR 3901
                ::.::...::|.|...|:...|.|       |::..|         .:||:...|.:.:||
 Worm  2527 ----QQCLTLNSSILFENCMENTRMVKE-------IEEAEYYSQMEDEIVFKIGNAHHEVNKNFR 2580

  Fly  3902 LILHTKMANPHYKPEMQAQTTLINFTVTPDGL-EEQLLAEVVKIERPD------------LEQMK 3953
            :...|:          .::|||.|..|..:.. :|:|..|:.:.....            :|...
 Worm  2581 VFFRTR----------ASETTLHNSIVIDNRYSDEELRHEICETMGSSNWFETLNHFNEMVESRN 2635

  Fly  3954 TEVTVQQNKFKISLKALEDELLARLASS----GENVLDDHALVINLENT----KRTVDEIEAKVR 4010
            .::::.:|        .|:|:|..|..|    .|..:|..|...||:.:    .:.:.|||..:|
 Worm  2636 NDISMMEN--------TENEMLDLLGRSKDLDDERAIDLLAEARNLQASITARNKEIAEIETSLR 2692

  Fly  4011 --EARVTTLQIDDTRNIYRSAAKRAAILYFVLTDLSRINPIYKFSLKSFMNVFRQAIAMAAESKN 4073
              |.|::. .||.:..|    .|....||.       .:|.|:.||||.:||....:........
 Worm  2693 AIEGRMSE-SIDYSMKI----IKMCYSLYL-------FDPFYRISLKSLVNVLNTKLFDHINDIK 2745

  Fly  4074 YEKRVLHLVESITLQTYRYTLRGLFEADKLTFTSH-----MTLRI----LIAAEQVAKDE----T 4125
            :.: :.|.:..:    |...||.:...|......|     |..::    :...::::.|.    :
 Worm  2746 FSE-IGHKISEL----YWNFLRNMLAWDDKMIIHHLLFHGMNYKVDKIEMEIKDRISMDSFMNFS 2805

  Fly  4126 DFLLRF-PHDP----------TTLSPLDFVGRSA-WGGIKSLTLIEH-FYGIDKDMENYTKRWRK 4177
            .|:|:. |..|          ||:.....|.|:| |   :..::::| |..::|.::.       
 Worm  2806 SFILKSEPKQPILLKYDAEVYTTILQFGQVTRNANW---RVYSILDHVFLKLEKLVDE------- 2860

  Fly  4178 FMASDTPEREQFPGEWKHRTPLQKLCIIRSLRPDRMTYAMRQFVEQTMGRSYAEIQTPPFGAIFQ 4242
                                |:..|..:.  |.|:.|....:.:.:.:                :
 Worm  2861 --------------------PIWLLLNVN--RSDQETVCKLKIIFEKL----------------K 2887

  Fly  4243 ELNAATPAFFILSPGVDPIRDVERYGQRQGFHSESDTLVNIS------------LGQGQELLAEQ 4295
            .|.....:|.|:....|.|             |.||.|:.||            ..|.:.:||..
 Worm  2888 NLPIVHSSFRIIVAYSDEI-------------SASDELIEISSHRFYFSRSTSLAQQIRRILANL 2939

  Fly  4296 AIIGALESGQQWVILQNIHLVVNWLPTLEKLIERIVLQSESKGESNFRLFISAEPAPDPQYHVI 4359
            ::..:|:..::...:|.|.|:                 |..:|....||:       ||:::|:
 Worm  2940 SLRSSLDKSEESQRIQIIRLI-----------------SFHRGLKLRRLY-------DPEFNVV 2979

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG3339NP_001036762.2 DHC_N1 279..903 CDD:462457 1/3 (33%)
DHC_N2 1532..1943 CDD:462462 93/439 (21%)
DYN1 1759..4514 CDD:227570 518/2837 (18%)
AAA_6 2095..2421 CDD:463697 64/382 (17%)
MT 3419..3759 CDD:463699 92/366 (25%)
Dynein_C 4545..4840 CDD:465677
dhc-3NP_506272.3 DHC_N2 687..1008 CDD:462462 75/346 (22%)
MT 2124..2429 CDD:463699 80/307 (26%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.