DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hmu and SSL1

DIOPT Version :10

Sequence 1:NP_477159.1 Gene:Hmu / 43294 FlyBaseID:FBgn0015737 Length:579 Species:Drosophila melanogaster
Sequence 2:NP_181662.3 Gene:SSL1 / 818729 AraportID:AT2G41300 Length:394 Species:Arabidopsis thaliana


Alignment Length:379 Identity:96/379 - (25%)
Similarity:151/379 - (39%) Gaps:71/379 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly    46 LKGALESNFHLEGAERLLEGRV------------YGPECLIARNNEIYTGIHGGEVIKLTSNHV- 97
            |.|::.   |..|..|.||.|.            .|...|..|....|.|:..|.::|.:...: 
plant    48 LSGSIH---HWTGEYRGLEKRPNHSEDNPPSRGWTGEPGLDPRGEGPYVGVTDGRILKWSGEDLG 109

  Fly    98 ----THVTKIGQPCEDIYEESRCGRPLGLAFDTQGNNLIIADAYYGLWQVDLGTNKKTLLVSPAQ 158
                .:.:...:.|.....|..|||||||:|:.:..:|...|.|.|:.:|.   .|..|......
plant   110 WIEFAYSSPHRKNCSSHKVEPACGRPLGLSFEKKSGDLYFCDGYLGVMKVG---PKGGLAEKVVD 171

  Fly   159 ELAGKSINRPAKIFNGVTVSKEGD-VYWTDSSSDFTIEDLVFASF-ANPSGRLFKYNRSKNVSEV 221
            |:.|:.:    ...|.:.:.:|.| :|:.|||..:...|:.:|.. ...:||..:|::....::|
plant   172 EVEGQKV----MFANQMDIDEEEDAIYFNDSSDTYHFGDVFYAFLCGEKTGRAIRYDKKTKEAKV 232

  Fly   222 LLDELAFANGLALSPNEDFIVVAETGAMRLTKYHLKGAKAGQSEVFVDGLPGLPDNLTPDAEG-I 285
            ::|.|.|.||||||.:..|::..|.....:.:|..||..||..::|.. |||..||:.....| .
plant   233 IMDRLHFPNGLALSIDGSFVLSCEVPTQLVHRYWAKGPNAGTRDIFAK-LPGYADNIRRTETGDF 296

  Fly   286 WVPLVQSADSEHPNGFTLFTRFPSVRLFLARMLALFELPFRYLNSVYP--NKFSQRFVHFVGHME 348
            ||.|       |..                      :.||..|:.::|  .||   |:..: .||
plant   297 WVAL-------HSK----------------------KTPFSRLSMIHPWVGKF---FIKTL-KME 328

  Fly   349 SITVL----APKRTTVVRVDWNGNIVGSLHGFD-KSAATVSHVLEFQDFLFLGS 397
            .:..|    .|....|......|.|:..|...: |:...:|.|.|....|:.||
plant   329 LLVFLFEGGKPHAVAVKLSGKTGEIMEILEDSEGKNMKFISEVQERDGRLWFGS 382

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HmuNP_477159.1 YvrE 61..>287 CDD:442613 66/245 (27%)
SSL1NP_181662.3 YvrE 88..>301 CDD:442613 62/227 (27%)
Str_synth 182..270 CDD:281131 26/87 (30%)

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