DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hmu and SSL2

DIOPT Version :9

Sequence 1:NP_477159.1 Gene:Hmu / 43294 FlyBaseID:FBgn0015737 Length:579 Species:Drosophila melanogaster
Sequence 2:NP_181661.1 Gene:SSL2 / 818728 AraportID:AT2G41290 Length:376 Species:Arabidopsis thaliana


Alignment Length:421 Identity:120/421 - (28%)
Similarity:180/421 - (42%) Gaps:104/421 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    45 DLKGALESNFHLEGAERLLEGRV-----------YGPECLIAR--NNEIYTGIHGGEVIKLTSNH 96
            ||.|  |...|  |.|.:|..::           .|||..:..  .:..|||:..|.::|..:|.
plant    20 DLSG--EGPKH--GGESMLTVQIPDFRLIPTTGALGPESFVFDFFGDGPYTGLSDGRIVKWLANE 80

  Fly    97 VTHV-----TKIGQPCEDIYEESR----CGRPLGLAFDTQGNNLIIADAYYGLWQVDLGTNKKTL 152
            ...:     |...:.||..:|..|    ||||||||||....:|.|||||.||           |
plant    81 SRWIDFAVTTSAREGCEGPHEHQRTEHVCGRPLGLAFDKSTGDLYIADAYMGL-----------L 134

  Fly   153 LVSP----AQELAGKSINRPAKIFNGVTVS-KEGDVYWTDSSSDFTIEDLVFASFA-NPSGRLFK 211
            .|.|    |.::..:.:|...:..|.:.:: :.|.||:|||||.:...:.:.|..: :.:|||.|
plant   135 KVGPTGGVATQVLPRELNEALRFTNSLDINPRTGVVYFTDSSSVYQRRNYIGAMMSGDKTGRLMK 199

  Fly   212 YNRSKNVSEVLLDELAFANGLALSPNEDFIVVAETGAMRLTKYHL-----KGAKAGQSEVFVDGL 271
            |:.:|.|: .||..|||.||:|||.|.|:::|.||...|:.:|.|     |.......|:|.:||
plant   200 YDNTKQVT-TLLSNLAFVNGVALSQNGDYLLVVETAMCRILRYWLNETSVKSQSHDNYEIFAEGL 263

  Fly   272 PGLPDNLTPDAE-GIWVPLVQSADSEHPNGFTLFTRFPSVRLFLARMLALFELPFRYLNSVYPNK 335
            ||.|||:..... |.||.|    :::|    :..|:|.....:|.|  |...||..::.      
plant   264 PGFPDNIKRSPRGGFWVGL----NTKH----SKLTKFAMSNAWLGR--AALGLPVDWMK------ 312

  Fly   336 FSQRFVHFVGHMESITVLAPKRTTVVRVDW---NGNIVGSLHGFDKSAATVSHVLEFQDFLFLGS 397
                 ||.|                    |   |||  |......:.:..:..|.|       |.
plant   313 -----VHSV--------------------WARYNGN--GMAVRLSEDSGVILEVFE-------GK 343

  Fly   398 PTNQYLARVKSPKAKQPTLKVRNVRVEGEGL 428
            ..|:::: :...:.|..||.|.:|.....|:
plant   344 NENKWIS-ISEVEEKDGTLWVGSVNTPFAGM 373

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HmuNP_477159.1 YvrE 61..>287 CDD:225921 84/259 (32%)
Str_synth 173..258 CDD:304606 35/91 (38%)
SSL2NP_181661.1 YvrE 30..>293 CDD:225921 90/282 (32%)
Str_synth 159..246 CDD:281131 35/87 (40%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 63 1.000 Domainoid score I3710
eggNOG 1 0.900 - - E1_COG1185
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 131 1.000 Inparanoid score I1870
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D757814at2759
OrthoFinder 1 1.000 - - FOG0001350
OrthoInspector 1 1.000 - - otm3471
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR10426
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X608
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
1110.930

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