DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hmu and Apmap

DIOPT Version :9

Sequence 1:NP_477159.1 Gene:Hmu / 43294 FlyBaseID:FBgn0015737 Length:579 Species:Drosophila melanogaster
Sequence 2:NP_082253.1 Gene:Apmap / 71881 MGIID:1919131 Length:415 Species:Mus musculus


Alignment Length:420 Identity:132/420 - (31%)
Similarity:215/420 - (51%) Gaps:54/420 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 GLLYALRVRIMNFMIFFL---------LIILMPGLPPRTTFPFKDYIVTPPKDLKGALESNFHLE 57
            |..::.||..|.|::..:         :::|...:.|: :|.||:     |..:.|.|..|..|.
Mouse    30 GSSFSGRVFRMTFLMLAVSLAIPLLGAMMLLESPIDPQ-SFSFKE-----PPFMFGVLHPNTKLR 88

  Fly    58 GAERLLEGRVYGPECLIARNNEIYTGIHGGEVIKLTSNHVTHVTKIGQ-PCEDIYEESRCGRPLG 121
            .||||.|.::.|||.::...:.::||...|.|:||.:..:..:.:.|. ||:...:|..||||||
Mouse    89 QAERLFENQLSGPESIVNIGDVLFTGTADGRVVKLENGEIETIARFGSGPCKTRDDEPTCGRPLG 153

  Fly   122 LAFDTQGNNLIIADAYYGLWQVDLGTNKKTLLVSPAQELAGKSINRPAKIFNGVTVSKEG-DVYW 185
            :.....| .|.:.|||.||::|:.......||:|....:.||.::    ..|.:||:::| .:|:
Mouse   154 IRAGPNG-TLFVVDAYKGLFEVNPQKRSVKLLLSSETPIEGKKMS----FVNDLTVTRDGRKIYF 213

  Fly   186 TDSSSDFTIED-LVFASFANPSGRLFKYNRSKNVSEVLLDELAFANGLALSPNEDFIVVAETGAM 249
            |||||.:...| |:....|...|||.:|:......:||||:|.|.||:.|||.|||::||||...
Mouse   214 TDSSSKWQRRDYLLLVMEATDDGRLLEYDTVTKEVKVLLDQLQFPNGVQLSPEEDFVLVAETTMA 278

  Fly   250 RLTKYHLKGAKAGQSEVFVDGLPGLPDNLTPDAE-GIWVPLVQSADSEHPN-GFTLFTRFPSVRL 312
            |:.:.::.|...|.:::||:.:||.|||:.|.:. |.||    :|.:...| ||::.. |.|.:.
Mouse   279 RIRRVYVSGLMKGGADMFVENMPGFPDNIRPSSSGGYWV----AAATIRANPGFSMLD-FLSDKP 338

  Fly   313 FLARMLALFELPFRYLNSVYPNKFSQRFVHFVGHMESITVLAPKRTTVVRVDWNGNIVGSLHGFD 377
            |:.||  :|::            |||         |::....|:.:.|:.|..:|....|||..|
Mouse   339 FIKRM--IFKM------------FSQ---------ETVMKFVPRYSLVLEVSDSGAFRRSLHDPD 380

  Fly   378 KSAAT-VSHVLEFQDFLFLGSPTNQYLARV 406
            ....| ||...|...:|:|||..:.::.|:
Mouse   381 GQVVTYVSEAHEHDGYLYLGSFRSPFICRL 410

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HmuNP_477159.1 YvrE 61..>287 CDD:225921 82/229 (36%)
Str_synth 173..258 CDD:304606 36/86 (42%)
ApmapNP_082253.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..29
YvrE 72..>319 CDD:225921 92/260 (35%)
NHL 95..>283 CDD:302697 69/192 (36%)
NHL repeat 101..136 CDD:271320 8/34 (24%)
NHL repeat 151..189 CDD:271320 14/38 (37%)
NHL repeat 199..247 CDD:271320 17/47 (36%)
Str_synth 200..287 CDD:304606 36/86 (42%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167850680
Domainoid 1 1.000 77 1.000 Domainoid score I8836
eggNOG 1 0.900 - - E1_COG1185
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H41380
Inparanoid 1 1.050 176 1.000 Inparanoid score I4039
Isobase 1 0.950 - 0 Normalized mean entropy S5287
OMA 1 1.010 - - QHG48544
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0001350
OrthoInspector 1 1.000 - - otm42684
orthoMCL 1 0.900 - - OOG6_101875
Panther 1 1.100 - - O PTHR10426
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R3581
SonicParanoid 1 1.000 - - X608
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
1615.740

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