DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hmu and Apmap

DIOPT Version :10

Sequence 1:NP_477159.1 Gene:Hmu / 43294 FlyBaseID:FBgn0015737 Length:579 Species:Drosophila melanogaster
Sequence 2:NP_001385894.1 Gene:Apmap / 366227 RGDID:1308874 Length:415 Species:Rattus norvegicus


Alignment Length:420 Identity:131/420 - (31%)
Similarity:215/420 - (51%) Gaps:54/420 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 GLLYALRVRIMNFMIFFL---------LIILMPGLPPRTTFPFKDYIVTPPKDLKGALESNFHLE 57
            |..::.||..|.|::..:         :::|...:.|: :|.||:     |..:.|.|:.|..|.
  Rat    30 GSSFSGRVFRMTFLMLAVSLAIPLLGAMMLLESPIDPQ-SFSFKE-----PPFMFGVLQPNTKLR 88

  Fly    58 GAERLLEGRVYGPECLIARNNEIYTGIHGGEVIKLTSNHVTHVTKIGQ-PCEDIYEESRCGRPLG 121
            .||||.|.::.|||.::...:.::||...|.|:||.:..:..:.:.|. ||:...:|..||||||
  Rat    89 QAERLFENQLNGPESIVNIGDVLFTGTADGRVVKLENGEIETIARFGSGPCKTRDDEPTCGRPLG 153

  Fly   122 LAFDTQGNNLIIADAYYGLWQVDLGTNKKTLLVSPAQELAGKSINRPAKIFNGVTVSKEG-DVYW 185
            :.....| .|.:.|||.||::|:.......||:|....:.||.::    ..|.:|::::| .:|:
  Rat   154 IRVGPNG-TLFVVDAYKGLFEVNPQKRSVKLLLSSETPIEGKKMS----FVNDLTITRDGRKIYF 213

  Fly   186 TDSSSDFTIED-LVFASFANPSGRLFKYNRSKNVSEVLLDELAFANGLALSPNEDFIVVAETGAM 249
            |||||.:...| |:........|||.:|:......:||||:|.|.||:.|||.|||::||||...
  Rat   214 TDSSSKWQRRDYLLLVMEGTDDGRLLEYDTVTKEVKVLLDQLQFPNGVQLSPEEDFVLVAETAMA 278

  Fly   250 RLTKYHLKGAKAGQSEVFVDGLPGLPDNLTPDAE-GIWVPLVQSADSEHPN-GFTLFTRFPSVRL 312
            |:.:.::.|...|.:::||:.:||.|||:.|.:. |.||    :|.:...| ||::.. |.|.:.
  Rat   279 RIRRVYVSGLMKGGADMFVENMPGFPDNIRPSSSGGYWV----AAATIRANPGFSMLD-FLSDKP 338

  Fly   313 FLARMLALFELPFRYLNSVYPNKFSQRFVHFVGHMESITVLAPKRTTVVRVDWNGNIVGSLHGFD 377
            |:.||  :|:|            |||         |::....|:.:.|:.|..:|....|||..|
  Rat   339 FIKRM--IFKL------------FSQ---------ETVMKFVPRYSLVLEVSDSGAFRRSLHDPD 380

  Fly   378 KSAAT-VSHVLEFQDFLFLGSPTNQYLARV 406
            ....| ||...|...:|:|||..:.::.|:
  Rat   381 GQVVTYVSEAHEHDGYLYLGSFRSPFICRL 410

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HmuNP_477159.1 YvrE 61..>287 CDD:442613 80/229 (35%)
ApmapNP_001385894.1 YvrE 92..>319 CDD:442613 82/235 (35%)
Str_synth 200..287 CDD:354965 34/86 (40%)

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