DRSC/TRiP Functional Genomics Resources

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Protein Alignment l(3)mbt and Samuel

DIOPT Version :10

Sequence 1:NP_733209.1 Gene:l(3)mbt / 43288 FlyBaseID:FBgn0002441 Length:1477 Species:Drosophila melanogaster
Sequence 2:NP_525101.2 Gene:Samuel / 34530 FlyBaseID:FBgn0032330 Length:968 Species:Drosophila melanogaster


Alignment Length:585 Identity:119/585 - (20%)
Similarity:197/585 - (33%) Gaps:165/585 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    31 SPSTANCNGVASASGGNPNPNSLLTLAPRKEELRFLP-LAPMGGNKTCNITISNVQPMKSKLKSV 94
            :||:::..|....:||..:|:.......:::.|:... |:|..|......|.:      |.|.|.
  Fly   275 TPSSSSYRGAGGGAGGGVSPSHQQQQQQQQQSLQQQQRLSPPSGPSMATATTT------SSLSSS 333

  Fly    95 NIVPNSIKSAGAGAT--------------VGSADAPLFQLVPSPSNPSQPLVAILAPNRKTTLLG 145
            :....|..::.:.||              :..|.|...||..|.||.|.   .|...:..|...|
  Fly   334 SSASASASASASAATHMPLHNLSTNLLNSIQQAAASQQQLRSSNSNSSS---NISGSSNNTKSDG 395

  Fly   146 GGASNGQPVVIRSGTPL-------------HKNSLTVETSNKPIQPGGSAAAAAVGGGTGGAPLT 197
            |.|||......|:.:.:             :.|:.|...|........:.|....|||.|||.  
  Fly   396 GAASNATDFSTRNYSDIMRCLAAKYNNANPNDNNATRRNSYYDGSTSATTATGGAGGGGGGAG-- 458

  Fly   198 LVGKTVVPPKIQAATPVQIPSTGPGAQVSLLANPLKPRAPLILSKVAVDKLRLKFSQVKSNPNAL 262
              |....|   .:|......|||   ..:..|..|.|.|....:..||.                
  Fly   459 --GSNSAP---SSALKTASSSTG---STTTTAKKLSPSAASAANSAAVS---------------- 499

  Fly   263 VLGKANHVKKLLTSPNPSGEDKTRSTQKNNKQNTSASQLKPVVAPKTAMPIATEVPTADNNKMSL 327
             |.|.:.|..:      .|.....:...:....:|.|||.|   |.|| |..||           
  Fly   500 -LSKESKVSAV------GGAGVGGAVASSGGGGSSMSQLAP---PPTA-PSPTE----------- 542

  Fly   328 IKSKPVAIKAVPLPSQEAPIVPA--VAPVVTS---------PEKVDVKPTAKPSIKTAPKPTPKP 381
             ::|          ||.|.:|.|  |:|.:|:         |..:|:..|  .::.|..:..   
  Fly   543 -QAK----------SQMAAVVAAASVSPFMTNFLPFSSGIFPPLIDMSST--QALLTLARAV--- 591

  Fly   382 LEMSVNGPAKEKKAPAKEQKQKTMDKPPVVKEIAQHTPCGPKELPKLKRSKSFVSNHPASPVANN 446
                                     |...::||.:         .|.:||.|..|: |::..|..
  Fly   592 -------------------------KDAEIQEILR---------SKQQRSGSNASS-PSASAAGT 621

  Fly   447 ERRHSVAIMAKEVDVIEQPSAAIETITIEDDDESEEEQQKPEIKKTPKQNQKPEKQEAPKKKQIP 511
            .|..|....|..........|.|.:..::   :.:::||:...::..:|:|...:|.:|:.....
  Fly   622 PRSSSTLNAALHQAAQFVTPALIYSAQLQ---QQQQQQQQQHQRQQQQQSQHASRQSSPRSTNDS 683

  Fly   512 MPILPAG-------------ITISTTSTAKK--KAVRKNSSVTTISSSSSDSSSYSDVEVVPTKK 561
            ..:.|.|             :.:|:...|.|  ||.|:.||..|.:::::..||.|.....|.::
  Fly   684 TTVAPIGDGGGGSSIASAAPLDLSSQPPAAKRFKAERRASSTATTATTATTGSSTSTPSPPPLEQ 748

  Fly   562  561
              Fly   749  748

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
l(3)mbtNP_733209.1 PRK10819 <332..>427 CDD:236768 15/105 (14%)
MBT_L3MBTL1-like_rpt1 846..945 CDD:439091
MBT_L3MBTL1-like_rpt2 957..1045 CDD:439092
MBT_L3MBTL1-like_rpt3 1058..1130 CDD:439093
SAM_PNT 1278..1367 CDD:460486
SamuelNP_525101.2 SAM_Samd7,11 795..862 CDD:188978
Blue background indicates that the domain is not in the aligned region.

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