DRSC/TRiP Functional Genomics Resources

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Protein Alignment l(3)mbt and Phc3

DIOPT Version :9

Sequence 1:NP_733209.1 Gene:l(3)mbt / 43288 FlyBaseID:FBgn0002441 Length:1477 Species:Drosophila melanogaster
Sequence 2:XP_006232288.1 Gene:Phc3 / 310258 RGDID:1307998 Length:1011 Species:Rattus norvegicus


Alignment Length:1021 Identity:191/1021 - (18%)
Similarity:340/1021 - (33%) Gaps:337/1021 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 PLSMASAEAKQLQRNISLSMSPANGGVISPSTANCNGVASASG---------GNPNPNSLLTLAP 58
            |....:.::...|.:|:||.||....::|.|.|:    :|.||         |:.:|....:.|.
  Rat   123 PTGSVTQQSSMSQTSINLSTSPTPAQLMSRSQAS----SSTSGSITQQTMLLGSTSPTLTASQAQ 183

  Fly    59 ---RKEELRF------------LPLAPMGGNKTCNITISNVQPMKSKLKSVNIVPNS----IKSA 104
               |.:.|.|            :|:.....:.:|....:.||.:..:.:.:.::.:|    .|||
  Rat   184 MYLRAQMLIFTPATTVAAVQSDIPVVSSSPSPSCQSAAAQVQNLTLRSQKLGVLSSSQNGPPKSA 248

  Fly   105 GA---------GATVGSADAPLFQLVPSPSNP----------------SQPLVAILAPNRKTTLL 144
            |.         ..||.|  :.:.|..|||.:.                :..:..::||...:.:.
  Rat   249 GQTQSLTICHNKTTVTS--SKISQRDPSPESKKGGSPGLESRSTAVTRTSSIHQLIAPASYSPIQ 311

  Fly   145 GGGASNGQPVVIRSGTP-LHKNSLTVETSNKPIQPGGSAAAAAVGGGTGGAPLTLVGKTVVPPKI 208
            .......|.:.:.|..| :..:.|.::...:.||                 |:||...:..||..
  Rat   312 PHSLIKHQQIPLHSPPPKVSHHQLILQQQQQQIQ-----------------PITLQSPSQDPPPS 359

  Fly   209 QAATPVQIPSTG-----PGAQVSLLANPLKPRAPLILSKVAVDKLRLKFSQVKSNPNALVLGKAN 268
            |...|  :|:.|     ..||.....:|::...|         .|.:..||.:|...::|:    
  Rat   360 QHCIP--LPNHGLSPASSNAQSQQHCSPIQSHPP---------PLTVSPSQAQSAQQSVVV---- 409

  Fly   269 HVKKLLTSPNPSGEDKTRSTQKNNKQNTSASQLKPVVAPKTAMPIATEVPTADNNKMSLIKSKPV 333
                   ||.|:.......|...:.|  :..|..|:|:.........:..|||..:.:...:.| 
  Rat   410 -------SPPPAHSPSQSPTIIIHPQ--ALVQPHPLVSSALHTGPNLQQATADQVQSTAQLNLP- 464

  Fly   334 AIKAVPLPSQEAPIV---PAVAPVVTSPEKVDVKPTAK---PSIKTAPKPTPKPLEMSVNGPAKE 392
              ..:|||:  :|:|   |.....:.||.:..|.||:.   .:::::|.|...|.:||.:.||:.
  Rat   465 --SHLPLPA--SPVVHIGPVQQSALVSPGQQIVSPTSHQQYSTLQSSPIPIATPPQMSASPPAQI 525

  Fly   393 KKAPAKEQKQKTMDKPPVVKE---IAQHTPCGPKELPKLKR--SKSFVSNHPASPVANNERRHSV 452
            ...|. :..|....:|.::.:   :.|:.....:|||..:.  ...|.:..|...||        
  Rat   526 PPLPL-QSMQSLQVQPEILSQGQVLVQNALVSEEELPAAEALVQLPFQTLPPPQTVA-------- 581

  Fly   453 AIMAKEVDVIEQPSAAIE----------------TITI-EDDDESEEEQQKPEIKKTPKQNQKPE 500
                  |::..||.|.::                ::.: :.:|..|||  :||           |
  Rat   582 ------VNLQVQPPAPVDPPVGMHLNQCHLHKVFSLKVYQVEDVCEEE--RPE-----------E 627

  Fly   501 KQEAPKKKQIPMP--ILPAGITISTTS--TAKKKAVRKNSSVTTISSSSSDSSSYSDVEVVPTKK 561
            ..|..:..:.|.|  :.||.||:....  |::...:.:.......|.|:|...|.||    ||. 
  Rat   628 SDECARMDRTPPPPTLSPAAITVGRGEDLTSEHPLLEQVELPAVASVSASVIKSPSD----PTH- 687

  Fly   562 TEKELSMLPGISIIKAESLPLSREDFERSLRCDEQVPQTPPKSSSSSSSGSHASEMSPPPKLADP 626
                         :.|.:.||             .:|....:|||:|.:.|..|..:.||:    
  Rat   688 -------------VSAPAPPL-------------LMPAASTRSSSTSLASSTPSLENKPPQ---- 722

  Fly   627 KPSSPPAKNAKKANDHDANPSPSSKTNDFKKSMMQNLNMLKWRGQQPANLQNSTVRFELNEFNFL 691
                             |...|...|:..:..::|       .|.:|..:..|::..|       
  Rat   723 -----------------AIVKPQILTHVIEGFVIQ-------EGLEPFPVSRSSLLIE------- 756

  Fly   692 QINERCQPRQGPAAYFERPLYDRPGRRPSACVHP------------------------------- 725
                  ||.:      :|||.|..... |.||.|                               
  Rat   757 ------QPVK------KRPLLDNQVVN-SVCVQPELQNNTKHADNSSDTEMEDMIAEETLEEMDS 808

  Fly   726 LLYLCQRCNFHGPAADFL-APHFCSVGCVRR-----SQKRRL---------------------PQ 763
            .|..|:.|...|...:|| :..||::.|.:|     |:|..|                     |:
  Rat   809 ELLKCEFCGKMGYPNEFLRSKRFCTMSCAKRYNVSCSKKFALSRWNRKPDNQSLGHRGRRPSGPE 873

  Fly   764 STQKESKISRTQL------EQTAGTAPDLPQ------KRQTNYKPHKSLSAIQEQLQQRQKD--- 813
            ...:|..:.:..:      |..|.....:|.      :||:..:..:.|..::.:......|   
  Rat   874 GAAREHILRQLPITYPSAEEDLASRDDPVPSAMTTRLRRQSERERERELRDVRIRKMPENSDLLP 938

  Fly   814 -KPRKPFRWSEYLKSKGKDVAAPIHLFLNPFPISPNCFEIGMKLEA 858
             ...:|..|:.      .||.|.||..       |.|.::..:..|
  Rat   939 VAQTEPSIWTV------DDVWAFIHSL-------PGCQDVADEFRA 971

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
l(3)mbtNP_733209.1 MBT 822..918 CDD:214723 8/37 (22%)
MBT 929..1028 CDD:214723
MBT 1038..1130 CDD:214723
SAM_PNT 1279..1366 CDD:280377
Phc3XP_006232288.1 SAM_Ph1,2,3 942..1010 CDD:188976 10/43 (23%)
SAM 944..1011 CDD:197735 10/41 (24%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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