DRSC/TRiP Functional Genomics Resources

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Protein Alignment l(3)mbt and Scml4

DIOPT Version :9

Sequence 1:NP_733209.1 Gene:l(3)mbt / 43288 FlyBaseID:FBgn0002441 Length:1477 Species:Drosophila melanogaster
Sequence 2:XP_006256634.1 Gene:Scml4 / 309859 RGDID:1310898 Length:414 Species:Rattus norvegicus


Alignment Length:73 Identity:26/73 - (35%)
Similarity:40/73 - (54%) Gaps:8/73 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly  1291 KLDDVR----TNPLHWTSWDVCEYIERALDSTDI---AKVIFEQDIDGRALLMLGRKELDTYLKL 1348
            ::.|.|    .||..||..||..:::.| |...:   .::..:.:|||.|||:|....:..||.|
  Rat   331 EIQDTRRPSSRNPSTWTVEDVVRFVKDA-DPQALGPHVELFRKHEIDGNALLLLRSDMIMKYLGL 394

  Fly  1349 KVGPAVKL 1356
            |:|||:||
  Rat   395 KLGPALKL 402

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
l(3)mbtNP_733209.1 MBT 822..918 CDD:214723
MBT 929..1028 CDD:214723
MBT 1038..1130 CDD:214723
SAM_PNT 1279..1366 CDD:280377 26/73 (36%)
Scml4XP_006256634.1 RBR 1..60 CDD:407329
SLED 95..203 CDD:403384
SAM_Scm 340..411 CDD:188977 24/64 (38%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166343706
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.840

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