DRSC/TRiP Functional Genomics Resources

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Protein Alignment l(3)mbt and L3mbtl4

DIOPT Version :10

Sequence 1:NP_733209.1 Gene:l(3)mbt / 43288 FlyBaseID:FBgn0002441 Length:1477 Species:Drosophila melanogaster
Sequence 2:NP_001420345.1 Gene:L3mbtl4 / 103690158 RGDID:1587524 Length:613 Species:Rattus norvegicus


Alignment Length:639 Identity:207/639 - (32%)
Similarity:306/639 - (47%) Gaps:108/639 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly   790 RQTNYKPHKSLSAIQEQLQQ------RQKDKP---------------RKPFRWSEYLKSKGKDVA 833
            ||.|.|...|:::.:...|.      .::.||               ::.:.|.:||: :|..||
  Rat     2 RQPNRKRKLSMASTEHMNQDGRMGQTEEETKPGDGATPSGRESSVTTQETWSWEQYLR-EGNAVA 65

  Fly   834 APIHLFL--NPFPISPNCFEIGMKLEAIDPENCSLFCVCSIVEVRGYRLKLSFDGYSSMYDFWVN 896
            ||:.||.  ..||...|.|::||:||.||....|:|||.|:.||.||||:|.||||.|.||||.|
  Rat    66 APVELFSKDQSFPEHENGFQVGMRLEGIDARRPSVFCVLSVAEVCGYRLRLHFDGYLSCYDFWTN 130

  Fly   897 ADSQDIFPPGWCDETARVLQAPKDYNSERFSWSRYLVKTGGKAAPRALFGHLNMQQQMDVRNGFA 961
            |.|.||.|.|||.:|...|..|:||..::|.|..||.....:.||:.||  .|......|...|.
  Rat   131 AGSPDIHPVGWCQKTKHELHIPRDYRKDKFVWMDYLKACRLQNAPKKLF--RNRSSNGPVPKEFQ 193

  Fly   962 VGMHLEAEDLNDTGKICVATVTDILDERIRVHFDGWDDCYDLWVHITSPYIHPCGW-HEGRQQLI 1025
            |||.:||.|..:...:|||||.||:::|:|||.|.|||.:|.|..::||.|.|.|| .|..:.|:
  Rat   194 VGMKVEAVDRRNPCLMCVATVADIVEDRVRVHSDSWDDSFDYWCDVSSPCIQPVGWCQENGRNLV 258

  Fly  1026 VPPDYQ-KSAFIWDDYISEVGGMAASKELFTPRQPMEYQERMKLEVVDQRNPCLIRPATVVTRKG 1089
            .||.|. ...|.|.||:......|...:.|..|.|..:...:|||.||:|||.|||.|||.....
  Rat   259 TPPGYPGPDKFSWADYLQATQAKAVPAKAFNTRAPHGFLPNLKLEAVDKRNPRLIRVATVTDVDD 323

  Fly  1090 YRVQLHLDCWPTEYYFWLEDDSPDLHPIGWCEATSHELETPPGYLQPKSVMP----CDVEGCRGF 1150
            |||::|.|.|..:|.:|::.||.|:||||||:.|.|.||.|.|....| ::|    |...||||.
  Rat   324 YRVKIHFDGWDHKYDYWMDADSQDIHPIGWCDVTGHPLEVPYGSEHVK-ILPGQPSCPTPGCRGI 387

  Fly  1151 GNAKRFNLNVHALRECCPYAPENWRQWRSKTVKPPRVAPENIRRGWAKKTKRACSEAKQAIKEDS 1215
            |:.:......|.....|||:..|.:                                ::|..:| 
  Rat   388 GHIRGPRYAGHHSAFGCPYSDVNLK--------------------------------REAALQD- 419

  Fly  1216 QQEIVYPKVAEVVQAKRKTSP----------------CEE-----KVVKKQKQMQ---------- 1249
                   ::.|..||..:..|                |||     ::|::.|.::          
  Rat   420 -------RLREQTQANLEFDPSHSKSENLCNLNFNGKCEEVDSECRLVQQAKCLKIKGREDTDLD 477

  Fly  1250 ---KEEDAEQVPDERSLAIARSFVKDYGPQFLPNYRLWQLNSAFKLDDVRTNPL-HWTSWDVCEY 1310
               :|..|.||.......::.:.:..:..:.||..|.........:.|::.:.: .||..:|.|:
  Rat   478 NLFREYSASQVQQMLHQPLSMTSMSAHPFRDLPLGREQHCKLLPGVADIQASEVARWTVDEVAEF 542

  Fly  1311 IERALDSTDIAKVIFEQDIDGRALLMLGRKELDTYLKLKVGPAVKLYSLILNLR 1364
            ::..|...:.||...::.|||:|.|:|.:.::...:::|:|||:|:|:.||..|
  Rat   543 VQSLLGCEEHAKCFKKEQIDGKAFLLLTQADIVKVMRIKLGPALKIYNSILMFR 596

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
l(3)mbtNP_733209.1 PRK10819 <332..>427 CDD:236768
MBT_L3MBTL1-like_rpt1 846..945 CDD:439091 49/98 (50%)
MBT_L3MBTL1-like_rpt2 957..1045 CDD:439092 39/89 (44%)
MBT_L3MBTL1-like_rpt3 1058..1130 CDD:439093 36/71 (51%)
SAM_PNT 1278..1367 CDD:460486 26/88 (30%)
L3mbtl4NP_001420345.1 MBT 79..179 CDD:459242 49/99 (49%)
MBT 188..279 CDD:459242 40/90 (44%)
MBT 288..368 CDD:459242 40/79 (51%)
zf-C2HC 379..407 CDD:460240 9/27 (33%)
SAM_Scm-like-3MBT3,4 531..596 CDD:188981 21/64 (33%)
Blue background indicates that the domain is not in the aligned region.

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