DRSC/TRiP Functional Genomics Resources

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Protein Alignment l(3)mbt and Samd11

DIOPT Version :9

Sequence 1:NP_733209.1 Gene:l(3)mbt / 43288 FlyBaseID:FBgn0002441 Length:1477 Species:Drosophila melanogaster
Sequence 2:XP_038965039.1 Gene:Samd11 / 102549710 RGDID:1310271 Length:844 Species:Rattus norvegicus


Alignment Length:509 Identity:103/509 - (20%)
Similarity:169/509 - (33%) Gaps:126/509 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly  1007 ITSPYI-HPCGWH-----EGRQQLIVPPDYQKSAFIWDDY------ISEVGGMAASKELFTPRQP 1059
            ::.||| ..|...     :..|:.::.|:.:.:....|.|      :||.|....::.|:....|
  Rat   330 LSCPYITSDCSSEKKARSKAPQETLLLPELESTMAPEDHYHQLMSALSEAGPFEETQRLYHLGIP 394

  Fly  1060 MEYQERMKLEVVDQRNPCLIRPATVVTRKGYRVQLHLDCWPTEYYFWLEDDSPDLH-----PIGW 1119
            .....|::.||           ||...|....:::||   |:.............|     |...
  Rat   395 SHDLLRVRQEV-----------ATATLRGPSSLEVHL---PSSTAGHRRKQGLVQHREGTVPAAT 445

  Fly  1120 CEATSHELETPPGYLQPKSV---------------MP---CDVEGCRGFGNAKRFNL--NVHALR 1164
            ...:..||..||..|.|::.               ||   |...|.....:|:...|  ....||
  Rat   446 TSFSERELSQPPPLLPPQNAPHITMGSHLRPPFFGMPTALCQTPGYSFLPSAQAEMLARQQELLR 510

  Fly  1165 ECCPYAPENWRQWRSKTV----KPPRVAPENI-----------RRGWAKKTKRACS--------- 1205
            :......|.....|.|.:    :|..:|||..           |||.....|...:         
  Rat   511 KQSLARLEMSELLRQKELGSVHRPQLLAPEVALHIPEGPDELQRRGSMLVLKHGSAPLLALPPQG 575

  Fly  1206 --------EAKQAIKEDSQQEIVYPKVAEVVQAKRKTSP--CEEKVVKKQKQMQKEEDAE----- 1255
                    .||::.:..||:..:....|:..:.|..|..  ..:.|.::..:....||.|     
  Rat   576 PPGPGPPIPAKESARSRSQKGSLGAASAQPSEPKETTRAGLWAQDVSEEPSKDSDGEDPEIAAAR 640

  Fly  1256 -------QVPDERSLAIARSFVKDYG-PQFL----------PNYRLWQLNSAFKLDDVRTNP--- 1299
                   |||...:.|..:..:.... |..|          |.:....:...| .|:..|.|   
  Rat   641 GGASTPSQVPAGGTRAEGKGLLSGSTLPPPLPLGFPCGAVSPYFHTGTMGGLF-TDEETTGPEDI 704

  Fly  1300 LHWTSWDVCEYIERALDSTDIAKVIFEQDIDGRALLMLGRKELDTYLKLKVGPAVKLYSLILNL- 1363
            ..||..|||.::.......:.|:|..||.|||..|.:|..:.|...:.||:|||:|:.:.:... 
  Rat   705 NKWTVDDVCNFVGGLSGCGEYARVFREQGIDGETLPLLTEEHLLNTMGLKLGPALKIRAQVAKRL 769

  Fly  1364 -RIAVVCKFDSKNIELESNTAGPIQR-EMDTPV--SAIKQLPEQSQTNGYKTDH 1413
             |:..:..|.         .|.|:|. .:..||  ...:.|...:.|:.|:..|
  Rat   770 GRVFYMASFP---------VALPVQTPSLQAPVLSPGHQPLSPATTTSPYEGTH 814

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
l(3)mbtNP_733209.1 MBT 822..918 CDD:214723
MBT 929..1028 CDD:214723 5/26 (19%)
MBT 1038..1130 CDD:214723 20/102 (20%)
SAM_PNT 1279..1366 CDD:280377 27/91 (30%)
Samd11XP_038965039.1 SAND 113..185 CDD:396076
SAM_Samd7,11 704..771 CDD:188978 21/66 (32%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166343716
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.840

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