DRSC/TRiP Functional Genomics Resources

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Protein Alignment TfIIA-L and Gtf2a1

DIOPT Version :9

Sequence 1:NP_476995.1 Gene:TfIIA-L / 43284 FlyBaseID:FBgn0011289 Length:366 Species:Drosophila melanogaster
Sequence 2:NP_071544.1 Gene:Gtf2a1 / 83830 RGDID:69246 Length:377 Species:Rattus norvegicus


Alignment Length:411 Identity:147/411 - (35%)
Similarity:210/411 - (51%) Gaps:93/411 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 SVLKVYHAVIEDVITNVRDAFLDEGVDEQVLQEMKQVWRNKLLASKAVELSPDSGDGSH------ 65
            :|.|:|.:||||||.:|||.|||:|||||||.|:|.:|.|||:.|:||       ||.|      
  Rat     9 TVPKLYRSVIEDVINDVRDIFLDDGVDEQVLMELKTLWENKLMQSRAV-------DGFHSEEQQL 66

  Fly    66 -------------------------PPPIVANNPKSHKAANAKAKKAAAATAVTSH----QHIGG 101
                                     |...|....::.:.....:::|.|...:...    ||:..
  Rat    67 LLQVQQQHQPQQQQHHHHHHHQQAQPQQTVPQQAQTQQVLIPASQQATAPQVIVPDSKLIQHMNA 131

  Fly   102 NSSMSSLVGLKSSAGMAAGSGIRNGLVPIKQEVNSQNPPPLHPTSAAS----MMQKQQQAASSGQ 162
            :|       :.|:|..||...:..|:.|: |::.:.:...|....||:    :.|.||......|
  Rat   132 SS-------ITSAAATAATLALPAGVTPV-QQILTNSGQLLQVVRAANGAQYIFQPQQSVVLQQQ 188

  Fly   163 GSIPIVATLDPNRIM-PV--NITLPSPAGSASSESRVLTIQVPASALQENQLTQILTAHLISSIM 224
                ::..:.|..:. ||  .:..|.| |..|.::.|: || |...|.....||:          
  Rat   189 ----VIPQMQPGGVQAPVIQQVLAPLP-GGISPQTGVI-IQ-PQQILFTGNKTQV---------- 236

  Fly   225 SLPTTLASSVLQQHVNAALSSANHQKTLA--------AAKQLDGALD-SSDEDESEESDDNIDND 280
             :|||:|:....|   |.:.:|..|:..|        ...|:||..| ||:|||.||.|  .|:|
  Rat   237 -IPTTVAAPTPAQ---AQIPAAGQQQPQAQPAQQQAPLVLQVDGTGDTSSEEDEDEEED--YDDD 295

  Fly   281 DDDDLDKDDDEDAEHEDAAEEEPLNSEDDVTDEDSAEMFDTDNVIVCQYDKITRSRNKWKFYLKD 345
            :::|.:||..||.:    .|||||||||||:||:..|:|||:||:|||||||.||:|||||:|||
  Rat   296 EEEDKEKDGAEDGQ----VEEEPLNSEDDVSDEEGQELFDTENVVVCQYDKIHRSKNKWKFHLKD 356

  Fly   346 GIMNMRGKDYVFQKSNGDAEW 366
            ||||:.|:||:|.|:.|||||
  Rat   357 GIMNLNGRDYIFSKAIGDAEW 377

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
TfIIA-LNP_476995.1 TFIIA_alpha_beta_like 8..>62 CDD:199899 31/53 (58%)
TFIIA 11..366 CDD:281188 143/405 (35%)
TFIIA_alpha_beta_like <306..366 CDD:199899 42/59 (71%)
Gtf2a1NP_071544.1 TFIIA 13..377 CDD:397322 143/405 (35%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 69..107 2/37 (5%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 248..330 38/90 (42%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166335587
Domainoid 1 1.000 144 1.000 Domainoid score I4494
eggNOG 1 0.900 - - E1_KOG2652
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 201 1.000 Inparanoid score I3696
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1443035at2759
OrthoFinder 1 1.000 - - FOG0002746
OrthoInspector 1 1.000 - - otm45649
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - LDO PTHR12694
Phylome 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X1433
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
1110.950

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