DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment TfIIA-L and Gtf2a1

DIOPT Version :9

Sequence 1:NP_476995.1 Gene:TfIIA-L / 43284 FlyBaseID:FBgn0011289 Length:366 Species:Drosophila melanogaster
Sequence 2:NP_113568.2 Gene:Gtf2a1 / 83602 MGIID:1933277 Length:378 Species:Mus musculus


Alignment Length:412 Identity:148/412 - (35%)
Similarity:211/412 - (51%) Gaps:94/412 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 SVLKVYHAVIEDVITNVRDAFLDEGVDEQVLQEMKQVWRNKLLASKAVELSPDSGDG-------- 63
            :|.|:|.:||||||.:|||.|||:|||||||.|:|.:|.|||:.|:||       ||        
Mouse     9 TVPKLYRSVIEDVINDVRDIFLDDGVDEQVLMELKTLWENKLMQSRAV-------DGFHSEEQQL 66

  Fly    64 ------SHPPPIVANNPKSHKAANAKAKKAAAATAVTSH----------------------QHIG 100
                  .|.|....::...|:...|:.::.....|.|..                      ||:.
Mouse    67 LLQVQQQHQPQQQQHHHHHHQHQQAQPQQTVPQQAQTQQVLIPASQQATAPQVIVPDSKLLQHMN 131

  Fly   101 GNSSMSSLVGLKSSAGMAAGSGIRNGLVPIKQEVNSQNPPPLHPTSAAS----MMQKQQQAASSG 161
            .:|       :.|:|..||...:..|:.|: |::.:.:...|....||:    ::|.||......
Mouse   132 ASS-------ITSAAATAATLALPAGVTPV-QQLLTNSGQLLQVVRAANGAQYILQPQQSVVLQQ 188

  Fly   162 QGSIPIVATLDPNRIM-PV--NITLPSPAGSASSESRVLTIQVPASALQENQLTQILTAHLISSI 223
            |    ::..:.|..:. ||  .:..|.| |..|.::.|: || |...|.....||:         
Mouse   189 Q----VIPQMQPGGVQAPVIQQVLAPLP-GGISPQTGVI-IQ-PQQILFTGNKTQV--------- 237

  Fly   224 MSLPTTLASSVLQQHVNAALSSANHQKTLA--------AAKQLDGALD-SSDEDESEESDDNIDN 279
              :|||:|:....|   |.:.:|..|:..|        ...|:||..| ||:|||.||.|  .|:
Mouse   238 --IPTTVAAPAPAQ---APMPAAGQQQPQAQPAQQQAPLVLQVDGTGDTSSEEDEDEEED--YDD 295

  Fly   280 DDDDDLDKDDDEDAEHEDAAEEEPLNSEDDVTDEDSAEMFDTDNVIVCQYDKITRSRNKWKFYLK 344
            |:::|.:||..||.:    .|||||||||||:||:..|:|||:||:|||||||.||:|||||:||
Mouse   296 DEEEDKEKDGAEDGQ----VEEEPLNSEDDVSDEEGQELFDTENVVVCQYDKIHRSKNKWKFHLK 356

  Fly   345 DGIMNMRGKDYVFQKSNGDAEW 366
            |||||:.|:||:|.|:.|||||
Mouse   357 DGIMNLNGRDYIFSKAIGDAEW 378

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
TfIIA-LNP_476995.1 TFIIA_alpha_beta_like 8..>62 CDD:199899 31/53 (58%)
TFIIA 11..366 CDD:281188 144/406 (35%)
TFIIA_alpha_beta_like <306..366 CDD:199899 42/59 (71%)
Gtf2a1NP_113568.2 TFIIA_alpha_beta_like 10..>60 CDD:199899 33/56 (59%)
TFIIA 13..378 CDD:281188 144/406 (35%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 69..108 6/38 (16%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 247..331 38/92 (41%)
TFIIA_alpha_beta_like <318..378 CDD:199899 42/59 (71%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167831914
Domainoid 1 1.000 144 1.000 Domainoid score I4594
eggNOG 1 0.900 - - E1_KOG2652
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 201 1.000 Inparanoid score I3759
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0002746
OrthoInspector 1 1.000 - - otm43578
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - LDO PTHR12694
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1533
SonicParanoid 1 1.000 - - X1433
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
1110.970

Return to query results.
Submit another query.