DRSC/TRiP Functional Genomics Resources

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Protein Alignment TfIIA-L and Gtf2a1l

DIOPT Version :9

Sequence 1:NP_476995.1 Gene:TfIIA-L / 43284 FlyBaseID:FBgn0011289 Length:366 Species:Drosophila melanogaster
Sequence 2:NP_076119.2 Gene:Gtf2a1l / 71828 MGIID:1919078 Length:468 Species:Mus musculus


Alignment Length:500 Identity:146/500 - (29%)
Similarity:212/500 - (42%) Gaps:179/500 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 VLKVYHAVIEDVITNVRDAFLDEGVDEQVLQEMKQVWRNKLLASKAVE----------------- 55
            |.|:|.:||||||..|||.|.:||::||||:::|::|..|:|.|||.|                 
Mouse     7 VPKLYQSVIEDVIEGVRDLFAEEGIEEQVLKDLKKLWETKVLQSKATEDFFRNSTQVPLLTLQLP 71

  Fly    56 ------LSPDSG----DGSHPPPIVANNPKSHKAANAKAKKAAAATAVTSHQHIGGNSSMSSLVG 110
                  |.|::.    .|...|..   .|:....||..|..|.|...:    |:           
Mouse    72 HALPPALQPEASLLIPAGRTLPSF---TPEDLNTANCGANFAFAGYPI----HV----------- 118

  Fly   111 LKSSAGMA---AGSGIRNGLVPIKQEVNS------QNP------------------PPLHPTSAA 148
               .||||   |...:....||:.....|      |:|                  |.|||.|..
Mouse   119 ---PAGMAFQTASGHLYKVNVPVMVTQTSGRTEILQHPFQQVLQQLGQPLVIQTTVPTLHPCSLQ 180

  Fly   149 SMMQKQQQAASSGQGSIPIVATLDPNRIM---PVNITLPSPAGSASSESRVLT------------ 198
            :..:|          |:.:.|.|.|..|:   ||:.|   ...:|:|:.|:|.            
Mouse   181 AATEK----------SLRMEAVLQPPPILHPPPVDRT---HVENAASDRRLLPGNELRPQESSPY 232

  Fly   199 IQVPA------SALQENQLTQIL--TAHLISSIMSLPTT----------LASSVLQQHVNAALSS 245
            :.:|.      :||.|:.|..:|  :|.|..::.|.|.:          |..|.||. :..::..
Mouse   233 LSLPGVGFPPQAALTESSLEPVLGVSASLTQNLHSDPFSQGPPGPLHHHLLESQLQS-LKDSIYG 296

  Fly   246 ANHQKTLAAAK-------------------------------QLDGALDSS---------DEDES 270
            .:..|.|..|:                               |:||..|:|         |.||:
Mouse   297 CDSTKQLRKAEEPSSLRVSEKNCTSERDLNIRVTDDDINEIIQIDGTGDNSSTEEMGSIRDADEN 361

  Fly   271 E-------------ESDDNIDNDDDDDLDKDDDEDAEHE-DAAEEEPLNSEDDVTDEDSAEMFDT 321
            |             |..|::.| :|...:..|:||  |: :|.||:||||.|||:::|..::|||
Mouse   362 EFPGIIDAGDLNVLEEVDSVSN-EDSTANSSDNED--HQINAPEEDPLNSGDDVSEQDVPDLFDT 423

  Fly   322 DNVIVCQYDKITRSRNKWKFYLKDGIMNMRGKDYVFQKSNGDAEW 366
            :||||||||||.||:|:||||||||:|...|:||||.|:.|:|||
Mouse   424 ENVIVCQYDKIHRSKNRWKFYLKDGVMCFGGRDYVFAKAIGEAEW 468

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
TfIIA-LNP_476995.1 TFIIA_alpha_beta_like 8..>62 CDD:199899 29/80 (36%)
TFIIA 11..366 CDD:281188 142/495 (29%)
TFIIA_alpha_beta_like <306..366 CDD:199899 38/59 (64%)
Gtf2a1lNP_076119.2 TFIIA_alpha_beta_like 7..>56 CDD:199899 27/48 (56%)
TFIIA 10..468 CDD:281188 142/495 (29%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 215..236 2/20 (10%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 379..416 17/39 (44%)
TFIIA_alpha_beta_like <411..468 CDD:199899 36/56 (64%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167831915
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG2652
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1443035at2759
OrthoFinder 1 1.000 - - FOG0002746
OrthoInspector 1 1.000 - - otm43578
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR12694
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1533
SonicParanoid 1 1.000 - - X1433
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1110.930

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