DRSC/TRiP Functional Genomics Resources

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Protein Alignment TfIIA-L and gtf2a1

DIOPT Version :9

Sequence 1:NP_476995.1 Gene:TfIIA-L / 43284 FlyBaseID:FBgn0011289 Length:366 Species:Drosophila melanogaster
Sequence 2:XP_031746336.1 Gene:gtf2a1 / 549662 XenbaseID:XB-GENE-1006404 Length:1223 Species:Xenopus tropicalis


Alignment Length:385 Identity:141/385 - (36%)
Similarity:212/385 - (55%) Gaps:53/385 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 VLKVYHAVIEDVITNVRDAFLDEGVDEQVLQEMKQVWRNKLLASKAV--------ELSPDSGDGS 64
            |.|:|.:||||||.:||:.|||||||||||.|:|.:|.:||:.||||        :|...:....
 Frog   866 VPKLYRSVIEDVINDVRELFLDEGVDEQVLMELKTLWESKLMQSKAVDGFHSEEQQLLLQAQQQQ 930

  Fly    65 HPP-PIVANNPKSHKAANAKAKKAAA---ATAVTSHQHIGGNSSMSSLVGLKSSAGMAAGS---- 121
            ||. ..|:.:|:..:||:.:.:....   ||.....|.:....  |.|:...::.||:|.:    
 Frog   931 HPQHHHVSQHPQQQQAASHQTQTQQVLIPATHQAPQQQVLVQD--SKLIQHMTTQGMSAAATAAT 993

  Fly   122 -GIRNGLVPIKQEVNSQNPPPLHPTSAAS----MMQKQQQAASSGQGSIPIVATLDPNRIM-PV- 179
             .:..|:.|::|.:.:.. ..|....||:    ::|.||......|    ::..:.|..:. || 
 Frog   994 LALPAGVTPVQQLITNSG-QLLQVVRAANGAQYLIQPQQSMVLQQQ----VIPQMQPGGVQAPVI 1053

  Fly   180 -NITLPSPAGSASSESRVLTIQVPASALQENQLTQILTAHLISSIMSLPTTLASSVLQQHVNAAL 243
             .:..|.| |..|.::.|: || |...|.....||:           :|||:::..........:
 Frog  1054 QQVLAPIP-GGLSQQTGVI-IQ-PQQILFTGNKTQV-----------IPTTMSAPQAPTQGQLTV 1104

  Fly   244 SSANHQ--KTLAAAKQLDGALDSSDEDESEESDDNIDNDDDDDLDKDDDEDAEHEDAAEEEPLNS 306
            :|...|  :......|:|||.|:|.| |.|:.|::.|:::::|.:| |.||.:    .|||||||
 Frog  1105 TSQQQQQGQQQQVVLQVDGAGDTSSE-EDEDEDEDYDDEEEEDKEK-DGEDGQ----VEEEPLNS 1163

  Fly   307 EDDVTDEDSAEMFDTDNVIVCQYDKITRSRNKWKFYLKDGIMNMRGKDYVFQKSNGDAEW 366
            ||||:||:..|:|||:||:|||||||.||:|||||:|||||||:.|:|:||.|:.|||||
 Frog  1164 EDDVSDEEGQELFDTENVVVCQYDKIHRSKNKWKFHLKDGIMNLNGRDFVFSKAIGDAEW 1223

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
TfIIA-LNP_476995.1 TFIIA_alpha_beta_like 8..>62 CDD:199899 32/61 (52%)
TFIIA 11..366 CDD:281188 137/380 (36%)
TFIIA_alpha_beta_like <306..366 CDD:199899 42/59 (71%)
gtf2a1XP_031746336.1 Stonin2_N 1..296 CDD:403289
AP_MHD_Cterm 515..832 CDD:416027
TFIIA 869..1223 CDD:397322 137/380 (36%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 140 1.000 Domainoid score I4727
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 199 1.000 Inparanoid score I3675
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1443035at2759
OrthoFinder 1 1.000 - - FOG0002746
OrthoInspector 1 1.000 - - otm48737
Panther 1 1.100 - - LDO PTHR12694
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1533
SonicParanoid 1 1.000 - - X1433
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
99.190

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