DRSC/TRiP Functional Genomics Resources

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Protein Alignment TfIIA-L and gtf2a1

DIOPT Version :9

Sequence 1:NP_476995.1 Gene:TfIIA-L / 43284 FlyBaseID:FBgn0011289 Length:366 Species:Drosophila melanogaster
Sequence 2:NP_997822.1 Gene:gtf2a1 / 323974 ZFINID:ZDB-GENE-030131-2694 Length:369 Species:Danio rerio


Alignment Length:390 Identity:141/390 - (36%)
Similarity:203/390 - (52%) Gaps:61/390 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 VLKVYHAVIEDVITNVRDAFLDEGVDEQVLQEMKQVWRNKLLASKAVELSPDSGDGSHPPPIVAN 72
            |.|:|.:|:||||..||:.|||||||||||.|:|.:|.:||:.||||       ||.|       
Zfish    10 VPKLYRSVMEDVIAEVRELFLDEGVDEQVLMELKTLWESKLMQSKAV-------DGFH------- 60

  Fly    73 NPKSHKAANAKAKKAAA----------------ATAVTSHQHIGGNSSM---SSLVGLKSSAGMA 118
             .:..:..:|:.::|.|                |......|.|..::.:   .|..|: |:|..|
Zfish    61 -TEEQQVLHAQQQQAQAQQTQQQTQPQQVLLPPAQTTPQQQVIVQDAKIMQHMSATGM-SAAATA 123

  Fly   119 AGSGIRNGLVPIKQEVNSQNPPPLHPTSAAS----MMQKQQQAASSGQGSIPIVATLDPNRIM-P 178
            |...:..|:.|.:|.:..|. ..|....||:    ::|.|||.....|    ::..:.|..:. |
Zfish   124 ATLALPTGVAPFQQLITPQG-QILQVVRAANGAQYIIQPQQQMLLQQQ----VLPQMQPGGVQAP 183

  Fly   179 VNITLPSPAGSASSESRVLTIQVPASALQEN---QLTQILTAHLISSIMSLPTTLASSVLQQHVN 240
            |...:.:|......:...:.||.....|..|   |.||::.|    :.|::.:....:.:|....
Zfish   184 VIQQVLTPLQGGLPQQTGVIIQPQQIVLTGNKVPQNTQVMQA----AAMAVQSGPGDAQVQTQPQ 244

  Fly   241 AALSSANHQKTLAAAK----QLDGALDSSDEDESEESDDNIDNDDDDDLDKDDDEDAEHEDAAEE 301
            |.......|:..:...    |:|||.|:|.| |.||.:|..|.|:|:|.:||..||.:    .||
Zfish   245 AQQQQQQQQQQASQQPPMMLQVDGAGDTSSE-EDEEEEDEYDEDEDEDKEKDGGEDGQ----VEE 304

  Fly   302 EPLNSEDDVTDEDSAEMFDTDNVIVCQYDKITRSRNKWKFYLKDGIMNMRGKDYVFQKSNGDAEW 366
            |||||.|||:||:..|:|||:||:|||||||.||:|||||:|||||||:.|:|:||.|:.|||||
Zfish   305 EPLNSGDDVSDEEDQELFDTENVVVCQYDKIHRSKNKWKFHLKDGIMNLNGRDFVFSKAIGDAEW 369

  Fly   367  366
            Zfish   370  369

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
TfIIA-LNP_476995.1 TFIIA_alpha_beta_like 8..>62 CDD:199899 30/53 (57%)
TFIIA 11..366 CDD:281188 137/385 (36%)
TFIIA_alpha_beta_like <306..366 CDD:199899 41/59 (69%)
gtf2a1NP_997822.1 TFIIA_alpha_beta_like 10..>60 CDD:199899 32/56 (57%)
TFIIA 13..369 CDD:281188 137/385 (36%)
TFIIA_alpha_beta_like <312..369 CDD:199899 39/56 (70%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170574758
Domainoid 1 1.000 145 1.000 Domainoid score I4535
eggNOG 1 0.900 - - E1_KOG2652
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 198 1.000 Inparanoid score I3774
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1443035at2759
OrthoFinder 1 1.000 - - FOG0002746
OrthoInspector 1 1.000 - - oto40540
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - LDO PTHR12694
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1533
SonicParanoid 1 1.000 - - X1433
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
1211.980

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