DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG5984 and flnc

DIOPT Version :9

Sequence 1:NP_651548.1 Gene:CG5984 / 43281 FlyBaseID:FBgn0039500 Length:271 Species:Drosophila melanogaster
Sequence 2:XP_031754944.1 Gene:flnc / 100329116 XenbaseID:XB-GENE-493579 Length:2767 Species:Xenopus tropicalis


Alignment Length:337 Identity:91/337 - (27%)
Similarity:139/337 - (41%) Gaps:118/337 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly    49 DAYPSESPRVY-VAPELTDAGKVQLLHFPSGAVRVNSPLGFIIKRNGVKGNFEVRVEGPSGQPIQ 112
            |.:..:||.|. ||....||.::.:.......:.||.|..|.::.||.:|..:.:|..|||. ::
 Frog  2431 DEHIPDSPFVVPVASRSDDARRLTVTSLQETGIIVNQPASFAVQLNGARGVIDAKVHTPSGM-VE 2494

  Fly   113 PVRQQQLDPERFQIDCQLDAGAGLYKVHIKCNSVTLPRSPF------------------------ 153
            .....::|.:::.|.. :....|::.:.:|.|...:|.|||                        
 Frog  2495 ECYVSEVDSDKYSIRF-IPRENGVHSIDVKFNGRHIPGSPFKIRVGEQSQAGDPGLVTAYGLGLE 2558

  Fly   154 ------------------------------------------------------IIVAIA-GATE 163
                                                                  .:::|. |..:
 Frog  2559 GGVTGRPSEFIVSTLNAGAGSLSVTIDGPSKVKLDCQDSPEGYKVSYTPMAPGNYLISIKYGGPQ 2623

  Fly   164 SIDGKP-----------------------------ASSSV-------PISDSDASRVQSRGLGLT 192
            .|.|.|                             :|:||       |...||||:|.|||.||:
 Frog  2624 HIVGSPFKARVTGVRLSGGHSLHETSTVLVETVTKSSASVGGYAMTAPKFSSDASKVVSRGPGLS 2688

  Fly   193 HVSLVERNEFTVDCGQAGSNMLLVGVLGQRGPCEEVVVRHLGRGIHRVTYRVCDPGDYILVVKWG 257
            ...:.::|.|||||.:||:|||:|||.|.:.|||||.|:|:|..::.|||.|.|.|||||:||||
 Frog  2689 KAFVGQKNTFTVDCSKAGTNMLMVGVHGPKTPCEEVYVKHMGNRLYNVTYTVKDKGDYILIVKWG 2753

  Fly   258 EQHVPGSPFSLS 269
            :|:||||||.::
 Frog  2754 DQNVPGSPFQVA 2765

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG5984NP_651548.1 Filamin 65..154 CDD:279024 22/166 (13%)
Filamin 179..266 CDD:279024 52/86 (60%)
IG_FLMN 181..271 CDD:214720 52/89 (58%)
flncXP_031754944.1 CH_FLNC_rpt1 22..146 CDD:409159
CH_FLNC_rpt2 150..264 CDD:409163
IG_FLMN 275..371 CDD:214720
IG_FLMN 375..471 CDD:214720
IG_FLMN 518..611 CDD:214720
IG_FLMN 616..705 CDD:214720
IG_FLMN 711..805 CDD:214720
IG_FLMN 808..908 CDD:214720
IG_FLMN 911..1007 CDD:214720
IG_FLMN 1011..1103 CDD:214720
IG_FLMN 1107..1195 CDD:214720
IG_FLMN 1199..1291 CDD:214720
IG_FLMN 1295..1391 CDD:214720
IG_FLMN 1394..1483 CDD:214720
IG_FLMN 1487..1580 CDD:214720
IG_FLMN 1583..1677 CDD:214720
IG_FLMN 1680..1776 CDD:214720
IG_FLMN <1834..1898 CDD:214720
IG_FLMN 1905..1991 CDD:214720
IG_FLMN 2084..2173 CDD:214720
IG_FLMN 2264..2350 CDD:214720
IG_FLMN 2356..2444 CDD:214720 4/12 (33%)
IG_FLMN 2450..2540 CDD:214720 21/91 (23%)
IG_FLMN 2547..2636 CDD:214720 5/88 (6%)
IG_FLMN 2677..2766 CDD:214720 52/89 (58%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.910

Return to query results.
Submit another query.