DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG17991 and Marchf9

DIOPT Version :10

Sequence 1:NP_651547.1 Gene:CG17991 / 43279 FlyBaseID:FBgn0039498 Length:294 Species:Drosophila melanogaster
Sequence 2:NP_001094071.1 Gene:Marchf9 / 679272 RGDID:1590688 Length:346 Species:Rattus norvegicus


Alignment Length:178 Identity:41/178 - (23%)
Similarity:66/178 - (37%) Gaps:54/178 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly    23 CWICFETDKEAGRQAWVNPCLCRGTNKWVHQSCISLWIDEKTRINNNLQAVSCPQCQTEYTIAYP 87
            |.|||:..::.   ..::||.|.|:.:..||.|:..||.|:       .:.||..|..:|.:.  
  Rat   110 CRICFQGPEQG---ELLSPCRCDGSVRCTHQPCLIRWISER-------GSWSCELCYFKYQVL-- 162

  Fly    88 NLWIFDRALELTNDLILTNLYNCLANVFTVVFAYWSAVSFGAKTYLQITGQEGHVHQIIQSGDLL 152
                   |:...|.|                  .|.|:|......:||..       |:.....|
  Rat   163 -------AISTKNPL------------------QWQAISLTVIEKVQIAA-------IVLGSLFL 195

  Fly   153 VVLVGFPLISVVLILGRLIP---WEDALLRFIRICYSLLRSLSMMCLG 197
            |..:.:      ||...|.|   |:...|.| :|||.:...:.::|:|
  Rat   196 VASISW------LIWSSLSPSAKWQRQDLLF-QICYGMYGFMDVVCIG 236

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG17991NP_651547.1 RING_CH-C4HC3_MARCH5 21..82 CDD:438361 17/58 (29%)
Marchf9NP_001094071.1 RING_CH-C4HC3_MARCH4_9 109..159 CDD:319725 17/58 (29%)

Return to query results.
Submit another query.