DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG31064 and LINC3

DIOPT Version :9

Sequence 1:NP_001287560.1 Gene:CG31064 / 43277 FlyBaseID:FBgn0051064 Length:877 Species:Drosophila melanogaster
Sequence 2:NP_177046.1 Gene:LINC3 / 843210 AraportID:AT1G68790 Length:1085 Species:Arabidopsis thaliana


Alignment Length:604 Identity:139/604 - (23%)
Similarity:231/604 - (38%) Gaps:158/604 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   383 ALMQKKLSDYLQALIEHREDSLFDYYEPHALMM----------------SDEIVVIMGILVGLNV 431
            |.:::|..|.|...|...|..||||.....|::                .||.:.::......|.
plant    53 ASLERKDRDALIEKILKLEKELFDYQHNMGLLLIEKKQWTSTNNELQQAYDEAMEMLKREKTSNA 117

  Fly   432 IDCNLCVKEED------LDSQQGVIDFSLYLRSSSRNADAAPEDSAPPALLDATGQGNMIAVLDQ 490
            |..|...|.|:      :|.:|.|.:....|:...|      |.|...:..:|..:.....|:..
plant   118 ITLNEADKREENLRKALIDEKQFVAELENDLKYWQR------EHSVVKSTSEAKLEEANALVIGM 176

  Fly   491 KNYIEELNRH----------LNATVGNLQAKVESLTTTNAL-MKEDLAI-----ARNSLLALQAE 539
            |....|::|.          :|.....|:.|::.:.|...: .:|.|::     |..::...|.|
plant   177 KEKALEVDRERAIAEEKFSVMNRKSSELERKLKEVETREKVHQREHLSLVTEREAHEAVFYKQRE 241

  Fly   540 N-QAMRQSTSAGDNNSTGSGGSSDKDKEKA--SEELVEERRK------------NSEL-EKE--- 585
            : |...:..:..::..:....|.:..:|:.  :|..:|::.|            .||| |||   
plant   242 DLQEWEKKLTLEEDRLSEVKRSINHREERVMENERTIEKKEKILENLQQKISVAKSELTEKEESI 306

  Fly   586 -LKL-QVSLKAESDMAMK----LLEKDIHEKQDTIV----------------------------- 615
             :|| .:|||.:...|||    :.||::||.::.::                             
plant   307 KIKLNDISLKEKDFEAMKAKVDIKEKELHEFEENLIEREQMEIGKLLDDQKAVLDSRRREFEMEL 371

  Fly   616 -SLRRQLD--------DIKQINLEM---YRKLQDCKASLTHKTELMTKLEVQKEDMASTIDQLEK 668
             .:||.||        :|:|:.:|:   ..||...:|:|..|.|.:.|.|...:....|:.:.||
plant   372 EQMRRSLDEELEGKKAEIEQLQVEISHKEEKLAKREAALEKKEEGVKKKEKDLDARLKTVKEKEK 436

  Fly   669 ------KWSH--------DKSNLGEILKTTSQTLTTQVTASEERAARAEAES-RIEREWRISL-- 716
                  |..|        ||..|.: ||...:.:.|:.|..|.| .|.|.|| ||.:|.|:..  
plant   437 ALKAEEKKLHMENERLLEDKECLRK-LKDEIEEIGTETTKQESR-IREEHESLRITKEERVEFLR 499

  Fly   717 -------------QEKELKLKEKIANLQGCLKELSEEKERNGKLKADLDKVRTQWSEAQTTLEE- 767
                         ||:||.|||:        :||.::|||..|....|||.|...:..|..:.| 
plant   500 LQSELKQQIDKVKQEEELLLKER--------EELKQDKERFEKEWEALDKKRANITREQNEVAEE 556

  Fly   768 ----LGIQLSVS-KLKVSEMQDQERRQRQL--LSGSAQSLQAMPEAVGSPGIWAPDSIATHCTAC 825
                ..:|:|.. :||..||..::..:|:|  :....:|.:|..|.:................|.
plant   557 NEKLRNLQISEKHRLKREEMTSRDNLKRELDGVKMQKESFEADMEDLEMQKRNLDMEFQRQEEAG 621

  Fly   826 EREFNLTRRKHHCRSCGEI 844
            ||:||...|.:..||..|:
plant   622 ERDFNERARTYEKRSQEEL 640

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG31064NP_001287560.1 RUN 316..439 CDD:280855 16/71 (23%)
CASP_C 495..>634 CDD:285395 42/220 (19%)
FYVE_RUFY1_like 813..874 CDD:277261 9/32 (28%)
LINC3NP_177046.1 PTZ00121 <122..667 CDD:173412 123/535 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
00.000

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