DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG31064 and Rundc3b

DIOPT Version :9

Sequence 1:NP_001287560.1 Gene:CG31064 / 43277 FlyBaseID:FBgn0051064 Length:877 Species:Drosophila melanogaster
Sequence 2:XP_006236065.1 Gene:Rundc3b / 688590 RGDID:1587590 Length:452 Species:Rattus norvegicus


Alignment Length:456 Identity:124/456 - (27%)
Similarity:206/456 - (45%) Gaps:76/456 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly   253 STGSGSGGNAGGGGGLDITDNARDTAEIERSNLVNICKLVVKELLEQSLRYGRMLDSDHLPLQHF 317
            |.|..||...||...|    :||:.| :||.||:.:|:..||.|:::|.  ...:|.......:|
  Rat     5 SLGGLSGSRGGGKKSL----SARNAA-VERRNLITVCRFSVKTLIDRSC--FETIDDSSPEFNNF 62

  Fly   318 FIVIEHVLGHGLRPKK---GLLGPRKELWDLLQSVEHYCPE-AQDITASVRDLPTVRTHIGRARA 378
            ..|:|.:|.|.|:.:.   |...|| ..||.::..   |.: :|:...|:.::..|.:...:.||
  Rat    63 AAVLEQILSHRLKGQVTWFGYESPR-SFWDYIRVA---CRKVSQNCICSIENMENVSSSRAKGRA 123

  Fly   379 WLRIALMQKKLSDYLQ-ALIEHREDSLFDYYEPHALMMSDEIVVIMGILVGLNVIDCNLCVKEED 442
            |:|:|||:|.||:|:. ||.:.:....|  ||..|:::.:|..::.|:|:|||.||.:.|:|.|.
  Rat   124 WIRVALMEKHLSEYISTALRDFKTTRRF--YEEGAIVLGEEANMLAGMLLGLNAIDFSFCLKGEG 186

  Fly   443 LDSQ-QGVIDFSLYLR------------------SSSRNADAAPEDSAPPALLDATGQGNMI--- 485
            ||.. ..|||::.||:                  .||.:..:.||:..||.:||.....|..   
  Rat   187 LDGTFPAVIDYTPYLKFEQSSDSISSDEEELRTFGSSDSEGSTPENVGPPLILDENSWFNKCKRV 251

  Fly   486 -----AVLDQKNYIEELNR----HLNATVGN---LQAKVESLTTTNALMKEDLAI----ARNSLL 534
                 ..|:||.|:|||.|    .|:.:|..   |..::|.....:.|.||.|..    .::.|.
  Rat   252 RQKYQLTLEQKGYLEELLRLRENQLSESVSQNKILLQRIEDSDLAHKLEKEQLEYIIVELQDQLT 316

  Fly   535 ALQAENQAMRQSTSAGDNNSTGSGGSSDKDKEKASEELVEERRKNSELEKELKLQVSLKAESDMA 599
            .|:..:...||..:|...|...|.|:.|.: ..|.:.|:..:......:|..:....|.||..::
  Rat   317 VLKNNDLRSRQELTAHLTNQWPSPGALDVN-AVALDTLLYRKHNKQWYDKSYQSLDQLSAEVSLS 380

  Fly   600 MKLLE----KDIHEKQDTIVSLRRQLDDIKQI--------NLEMYRKL-----QDCKASLTHKTE 647
            ...|:    ::...|||::..:....:|...:        ::..|:.|     .||.||.|  ||
  Rat   381 QASLDPGHSQEGDGKQDSLNFIGEGKEDTPSLLGLCGSLTSVASYKSLTSLKSNDCLASPT--TE 443

  Fly   648 L 648
            :
  Rat   444 I 444

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG31064NP_001287560.1 RUN 316..439 CDD:280855 41/127 (32%)
CASP_C 495..>634 CDD:285395 33/161 (20%)
FYVE_RUFY1_like 813..874 CDD:277261
Rundc3bXP_006236065.1 RUN 61..184 CDD:280855 41/128 (32%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166343798
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG4381
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.740

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