DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG31064 and Rundc3b

DIOPT Version :10

Sequence 1:NP_001287560.1 Gene:CG31064 / 43277 FlyBaseID:FBgn0051064 Length:877 Species:Drosophila melanogaster
Sequence 2:XP_006236065.1 Gene:Rundc3b / 688590 RGDID:1587590 Length:452 Species:Rattus norvegicus


Alignment Length:456 Identity:124/456 - (27%)
Similarity:206/456 - (45%) Gaps:76/456 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly   253 STGSGSGGNAGGGGGLDITDNARDTAEIERSNLVNICKLVVKELLEQSLRYGRMLDSDHLPLQHF 317
            |.|..||...||...|    :||:.| :||.||:.:|:..||.|:::|.  ...:|.......:|
  Rat     5 SLGGLSGSRGGGKKSL----SARNAA-VERRNLITVCRFSVKTLIDRSC--FETIDDSSPEFNNF 62

  Fly   318 FIVIEHVLGHGLRPKK---GLLGPRKELWDLLQSVEHYCPE-AQDITASVRDLPTVRTHIGRARA 378
            ..|:|.:|.|.|:.:.   |...|| ..||.::..   |.: :|:...|:.::..|.:...:.||
  Rat    63 AAVLEQILSHRLKGQVTWFGYESPR-SFWDYIRVA---CRKVSQNCICSIENMENVSSSRAKGRA 123

  Fly   379 WLRIALMQKKLSDYLQ-ALIEHREDSLFDYYEPHALMMSDEIVVIMGILVGLNVIDCNLCVKEED 442
            |:|:|||:|.||:|:. ||.:.:....|  ||..|:::.:|..::.|:|:|||.||.:.|:|.|.
  Rat   124 WIRVALMEKHLSEYISTALRDFKTTRRF--YEEGAIVLGEEANMLAGMLLGLNAIDFSFCLKGEG 186

  Fly   443 LDSQ-QGVIDFSLYLR------------------SSSRNADAAPEDSAPPALLDATGQGNMI--- 485
            ||.. ..|||::.||:                  .||.:..:.||:..||.:||.....|..   
  Rat   187 LDGTFPAVIDYTPYLKFEQSSDSISSDEEELRTFGSSDSEGSTPENVGPPLILDENSWFNKCKRV 251

  Fly   486 -----AVLDQKNYIEELNR----HLNATVGN---LQAKVESLTTTNALMKEDLAI----ARNSLL 534
                 ..|:||.|:|||.|    .|:.:|..   |..::|.....:.|.||.|..    .::.|.
  Rat   252 RQKYQLTLEQKGYLEELLRLRENQLSESVSQNKILLQRIEDSDLAHKLEKEQLEYIIVELQDQLT 316

  Fly   535 ALQAENQAMRQSTSAGDNNSTGSGGSSDKDKEKASEELVEERRKNSELEKELKLQVSLKAESDMA 599
            .|:..:...||..:|...|...|.|:.|.: ..|.:.|:..:......:|..:....|.||..::
  Rat   317 VLKNNDLRSRQELTAHLTNQWPSPGALDVN-AVALDTLLYRKHNKQWYDKSYQSLDQLSAEVSLS 380

  Fly   600 MKLLE----KDIHEKQDTIVSLRRQLDDIKQI--------NLEMYRKL-----QDCKASLTHKTE 647
            ...|:    ::...|||::..:....:|...:        ::..|:.|     .||.||.|  ||
  Rat   381 QASLDPGHSQEGDGKQDSLNFIGEGKEDTPSLLGLCGSLTSVASYKSLTSLKSNDCLASPT--TE 443

  Fly   648 L 648
            :
  Rat   444 I 444

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG31064NP_001287560.1 RUN_RUFY1_like 281..436 CDD:439043 50/159 (31%)
Smc <562..>807 CDD:440809 21/104 (20%)
FYVE_RUFY1_like 813..874 CDD:277261
Rundc3bXP_006236065.1 RUN_RUNDC3B 31..181 CDD:439062 48/157 (31%)
Blue background indicates that the domain is not in the aligned region.

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