DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ser and DLK1

DIOPT Version :9

Sequence 1:NP_001287558.1 Gene:Ser / 43275 FlyBaseID:FBgn0004197 Length:1407 Species:Drosophila melanogaster
Sequence 2:NP_003827.4 Gene:DLK1 / 8788 HGNCID:2907 Length:383 Species:Homo sapiens


Alignment Length:353 Identity:95/353 - (26%)
Similarity:133/353 - (37%) Gaps:126/353 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly   260 FGHYACGSEGQKLCLNGWQGVNCEEAICKAGCDPVHGKCDRPGECECRPGWRGPLCNECMVYPGC 324
            |||...|:|                  |...|:|.:|.|:....|.|:|||:||||::|:..|||
Human    17 FGHSTYGAE------------------CFPACNPQNGFCEDDNVCRCQPGWQGPLCDQCVTSPGC 63

  Fly   325 KHGSCNGSAWKCVCDTNWGGILCDQDLNFCGTHEPCKHGGTCENTAPDKYRCTCAEGLSGEQCEI 389
            .||.| |...:|:|...|.|.|||:|:..|.: .||.:..||.:.....|.|:||.|.||:.|:.
Human    64 LHGLC-GEPGQCICTDGWDGELCDRDVRACSS-APCANNRTCVSLDDGLYECSCAPGYSGKDCQK 126

  Fly   390 VEHPCATR--PCRNGGTCTLKTSNRTQAQVYRTSHGRSNMGRPVRRSSSMRSLDHLRPEGQALNG 452
            .:.||...  ||::||||                                     :..||:|.:.
Human   127 KDGPCVINGSPCQHGGTC-------------------------------------VDDEGRASHA 154

  Fly   453 SSSPGLVSLGSLQLQQQLAPDFTCDCAAGWTGPTCEINIDECAGGPCEHGGTCIDLIGGFRCECP 517
            |                      |.|..|::|..|||..:.|...|||:.|.|.|:.|.|||.||
Human   155 S----------------------CLCPPGFSGNFCEIVANSCTPNPCENDGVCTDIGGDFRCRCP 197

  Fly   518 PEWHGDVCQVDVNECEAPHSAGIAANALLTTTATAIIGSNLSSTALLAALTSAVASTSLAIGPCI 582
            ..:....|...|..|                                            |..||.
Human   198 AGFIDKTCSRPVTNC--------------------------------------------ASSPCQ 218

  Fly   583 NAKEC-RNQPGSFACICKEGWGGVTCAE 609
            |...| ::...|:.|:||..:.|:||.:
Human   219 NGGTCLQHTQVSYECLCKPEFTGLTCVK 246

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SerNP_001287558.1 MNNL 83..161 CDD:284966
DSL 220..282 CDD:279722 5/21 (24%)
EGF_CA 350..388 CDD:238011 13/37 (35%)
EGF_CA 490..526 CDD:238011 13/35 (37%)
EGF_CA 610..645 CDD:238011 95/353 (27%)
EGF_CA 647..683 CDD:238011
EGF_CA 798..833 CDD:238011
EGF_CA 879..913 CDD:238011
EGF_CA 916..952 CDD:238011
VWC_out <993..1053 CDD:214565
DLK1NP_003827.4 EGF_CA 88..125 CDD:238011 13/37 (35%)
EGF_CA 135..168 CDD:238011 14/91 (15%)
EGF_CA 175..205 CDD:238011 12/29 (41%)
EGF_CA 212..245 CDD:238011 12/76 (16%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
10.910

Return to query results.
Submit another query.