DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ser and Dll1

DIOPT Version :9

Sequence 1:NP_001287558.1 Gene:Ser / 43275 FlyBaseID:FBgn0004197 Length:1407 Species:Drosophila melanogaster
Sequence 2:NP_114452.2 Gene:Dll1 / 84010 RGDID:70949 Length:714 Species:Rattus norvegicus


Alignment Length:754 Identity:240/754 - (31%)
Similarity:316/754 - (41%) Gaps:207/754 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    68 LIALILILLVHKISAAGNFELEILEISNTNSHLLNGYCC----GMPAELRATKTIGCSPCTTAFR 128
            |...::..|:.::.::|.|||::.|..|....|.|..||    |.|          |: |.|.||
  Rat     7 LALAVVSALLCQVWSSGVFELKLQEFVNKKGLLGNRNCCRGGSGPP----------CA-CRTFFR 60

  Fly   129 LCLKEYQTTEQGASIS--TGCSFGNATTKILGGSSFVLSDPGVG-------AIVLPFTFRWTKSF 184
            :|||.||     ||:|  ..|::|:|.|.:||..||.|.| |.|       .|..||.|.|..:|
  Rat    61 VCLKHYQ-----ASVSPEPPCTYGSAVTPVLGVDSFSLPD-GAGIDPAFSNPIRFPFGFTWPGTF 119

  Fly   185 TLILQALDMYNTSYPD------AERLIEETSYSGVILPSPEWKTLDHIGRNARITYRVRVQCAVT 243
            :||::||   :|..||      .||||...:....:....||....|......:.|..|..|...
  Rat   120 SLIIEAL---HTDSPDDLATENPERLISRLTTQRHLTVGEEWSQDLHSSGRTDLRYSYRFVCDEH 181

  Fly   244 YYNTTCTTFCRPRDDQFGHYACGSEGQKLCLNGWQGVNCEEAICKAGCDPVHGKCDRPGECECRP 308
            ||...|:.|||||||.|||:.||..|:|:|..||:|..|.:.||..|||..||.||:||||:||.
  Rat   182 YYGEGCSVFCRPRDDAFGHFTCGERGEKMCDPGWKGQYCTDPICLPGCDDQHGYCDKPGECKCRV 246

  Fly   309 GWRGPLCNECMVYPGCKHGSCNGSAWKCVCDTNWGGILCDQDLNFCGTHEPCKHGGTCENTAPDK 373
            ||:|..|:||:.||||.||:|. ..|:|.|...|||:.|:||||:|..|:||::|.||.||    
  Rat   247 GWQGRYCDECIRYPGCLHGTCQ-QPWQCNCQEGWGGLFCNQDLNYCTHHKPCRNGATCTNT---- 306

  Fly   374 YRCTCAEGLSGEQCEIVEHPCATRPCRNGGTCTLKTSNRTQAQVYRTSHGRSNMGRPVRRSSSMR 438
                                                                             
  Rat   307 ----------------------------------------------------------------- 306

  Fly   439 SLDHLRPEGQALNGSSSPGLVSLGSLQLQQQLAPDFTCDCAAGWTGPTCEINIDECAGGPCEHGG 503
                    ||             ||          :||.|..|:||..||:.:||||..||.:||
  Rat   307 --------GQ-------------GS----------YTCSCRPGYTGANCELEVDECAPSPCRNGG 340

  Fly   504 TCIDLIGGFRCECPPEWHGDVCQVDVNECEAPHSAGIAANALLTTTATAIIGSNLSSTALLAALT 568
            :|.||...:.|.|||.::|.||::....|                                    
  Rat   341 SCTDLEDSYSCTCPPGFYGKVCELSAMTC------------------------------------ 369

  Fly   569 SAVASTSLAIGPCINAKECRNQP-GSFACICKEGWGGVTCAENLDDCVGQ-CRNGATCIDLVNDY 631
                    |.|||.|...|.:.| |.:.|.|..|:.|..|.:.:|.|... |.|||.|:||.|.|
  Rat   370 --------ADGPCFNGGRCSDNPDGGYTCHCPAGFSGFNCEKKIDLCSSSPCSNGAKCVDLGNSY 426

  Fly   632 RCACASGFKGRDCETDIDECATSPCRNGGECVDMVGKFNCICPLGYSGSLCEEAKENCTPSPCLE 696
            .|.|.:||.||.||.::|:||:|||.|||.|.|.|..|:|.||.||:|..|......|..:||..
  Rat   427 LCRCQTGFSGRYCEDNVDDCASSPCANGGTCRDSVNDFSCTCPPGYTGRNCSAPVSRCEHAPCHN 491

  Fly   697 G-HCLNTPEGYYCHCPPDRAGKHCEQLRPLCSQPP------CNEGCFANVSLATSATTTT----- 749
            | .|....:.|.|.|.....|.:|:.|.|   :||      ...|.|..|::........     
  Rat   492 GATCHQRGQRYMCECAQGYGGANCQFLLP---EPPPDLIVAAQGGSFPWVAVCAGVVLVLLLLLG 553

  Fly   750 TTTTTATTTRKMAK--PSGLPCSGHGSCEMSDVGTFCKC 786
            ..........|:.|  |...||.|    |...:.....|
  Rat   554 CAAVVVCVRLKLQKHQPPPDPCGG----ETETMNNLANC 588

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SerNP_001287558.1 MNNL 83..161 CDD:284966 31/83 (37%)
DSL 220..282 CDD:279722 26/61 (43%)
EGF_CA 350..388 CDD:238011 12/37 (32%)
EGF_CA 490..526 CDD:238011 17/35 (49%)
EGF_CA 610..645 CDD:238011 17/35 (49%)
EGF_CA 647..683 CDD:238011 19/35 (54%)
EGF_CA 798..833 CDD:238011
EGF_CA 879..913 CDD:238011
EGF_CA 916..952 CDD:238011
VWC_out <993..1053 CDD:214565
Dll1NP_114452.2 MNNL 22..91 CDD:400141 31/84 (37%)
DSL 158..220 CDD:128366 26/61 (43%)
EGF_CA 287..325 CDD:238011 22/137 (16%)
EGF_CA 328..363 CDD:238011 17/34 (50%)
EGF_CA <372..402 CDD:238011 11/29 (38%)
EGF_CA 405..440 CDD:238011 17/34 (50%)
EGF_CA 442..477 CDD:238011 19/34 (56%)
EGF 484..514 CDD:394967 9/29 (31%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 644..690
Interaction with MAGI1. /evidence=ECO:0000250|UniProtKB:Q61483 711..714
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166338544
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D197806at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.850

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