DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ser and Megf11

DIOPT Version :9

Sequence 1:NP_001287558.1 Gene:Ser / 43275 FlyBaseID:FBgn0004197 Length:1407 Species:Drosophila melanogaster
Sequence 2:XP_038938374.1 Gene:Megf11 / 691517 RGDID:1582797 Length:1139 Species:Rattus norvegicus


Alignment Length:1212 Identity:297/1212 - (24%)
Similarity:420/1212 - (34%) Gaps:404/1212 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly   228 RNARITYRVRVQCAVTYYNTTCTTFCRPR-DDQFGHYACGSEGQKLCLNGWQGVNCEEAI----- 286
            |..|..||.|.||...||..  ..||.|. .::..|..|.|.....|..||.|.:|....     
  Rat    76 RGLRTMYRRRSQCCPGYYEN--GDFCIPLCTEECMHGRCVSPDTCHCEPGWGGPDCSSGCDSEHW 138

  Fly   287 ---------CKAG--CDPV-----------------------HGK-------------CD-RPGE 303
                     |:.|  |:|:                       |||             || |.||
  Rat   139 GPHCSNRCQCQNGALCNPITGACVCAPGFRGWRCEEFCAPGTHGKGCQLLCQCHHGASCDPRTGE 203

  Fly   304 CECRPGWRGPLCNE----------CMVYPGCKH-GSCNGSAWKCVCDTNWGGILCDQDL------ 351
            |.|.||:.|..|.|          |.:...|:: |:|:....:|.|...|.|.:|.|..      
  Rat   204 CLCAPGYTGVYCEELCPPGSHGAHCELRCPCQNGGTCHHITGECACPPGWTGAVCAQPCPPGTFG 268

  Fly   352 NFCGTHEPCKHGGTCENTAPDKYRCTCAEGLSGEQCEIVEHP-------CATR-PCRNGGTCTLK 408
            ..|....||.|||.|::...   :|.|..|..|::|: .|.|       |:.| .|.|||.|:..
  Rat   269 QNCSQDCPCHHGGQCDHVTG---QCHCTAGYMGDRCQ-EECPFGTFGFRCSQRCDCHNGGQCSPA 329

  Fly   409 TSNRTQAQVYRTSHGRSNMGRPVRRSSSMRSLDHLRPEGQALNGSSSPGLVSLGSLQLQQQLA-- 471
            |........|:   |.|...|             |.|||  |:|   ||..|......:..::  
  Rat   330 TGACECEPGYK---GPSCQER-------------LCPEG--LHG---PGCTSPCPCDTENTISCH 373

  Fly   472 -PDFTCDCAAGWTGPTCEINIDECAGG----------PCEHGGTCIDLIGGFRCECPPEWHGDVC 525
             ....|.|..||:|..|.   :.|..|          .|::|..|..:.|.  |.|.|.:.|:||
  Rat   374 PVTGACTCQPGWSGHYCN---ESCPAGYYGNGCQLPCTCQNGADCHSITGS--CTCAPGFMGEVC 433

  Fly   526 QVDVNECEAPHSAGIAANALLTTTATAIIGSNLSSTALLAALTSAVASTSLAIGPCINAKECRNQ 590
            .|       |.:||             ..|.|.||                 :..|.|...|...
  Rat   434 AV-------PCAAG-------------TYGPNCSS-----------------VCSCSNGGTCSPV 461

  Fly   591 PGSFACICKEGWGGVTCA----------ENLDDCVGQCRNGATCIDLVNDYRCACASGFKGRDCE 645
            .||  |.|:|||.|:.|:          ...:.||  |.|||.|...  |..|||..|:.|..||
  Rat   462 DGS--CTCREGWQGLDCSLPCPSGTWGLNCNESCV--CANGAACSPF--DGSCACTPGWLGDSCE 520

  Fly   646 TDIDE------CAT-SPCRNGGECVDMVGKFNCICPLGYSGSLCE------------------EA 685
            ....:      |:. ..|.:...|..:.|  :|.|..|::|..|:                  |.
  Rat   521 LPCPDGTFGLNCSEHCDCSHADGCDPVTG--HCCCLAGWTGIRCDSTCPPGRWGPNCSVSCSCEN 583

  Fly   686 KENCTPSPCLEGHCLNTP--EGYYCH--CPPDRAGKHCEQLRPLC--SQPPCNEGCFANVSLATS 744
            ..:|:|   ::|.|...|  .|..|.  |||...|..|.|..|||  |:.||:.           
  Rat   584 GGSCSP---VDGSCECAPGFRGPLCQRICPPGFYGHGCAQPCPLCVHSRGPCHH----------- 634

  Fly   745 ATTTTTTTTTATTTRKMAKPSGLPCSGHGSCEMSDVGTFCK--CHVGHTGTFCEHNLNECSPNPC 807
                                    .||...|.....|..|.  |..||.|..|   ...||   |
  Rat   635 ------------------------VSGICECLPGFSGALCNQVCAGGHFGQDC---AQLCS---C 669

  Fly   808 RNGGICLDGDGDFTCECMSGWTGKRCSERATGCYAG-------QCQNGGTCMPGAPDKALQPHCR 865
            .|.|.|...||  :|:|..|||||.||:.....:.|       .|.||.:|  .|.|.|    |.
  Rat   670 ANNGTCSPIDG--SCQCFPGWTGKDCSQACPSGFWGSACFHTCSCHNGASC--SAEDGA----CH 726

  Fly   866 CAPGWTGLFCAEAIDQCRGQ----------PCHNGGTCESGAGWFRCVCAQGFSGPDCRINVNEC 920
            |.||||||||.:   :|...          .|.||.:|:...|  :|.|..||||..|.   ..|
  Rat   727 CTPGWTGLFCTQ---RCPAAFFGKDCGHICQCQNGASCDHITG--KCTCRTGFSGRHCE---QRC 783

  Fly   921 SPQ----------PCQGGATCIDGIGGYSCICPPGRHGLRCE--ILLSDPKSACQNASNTISPYT 973
            :|.          .|...||| |.:.| :|.|.||..|:||:  .|:.|          .::|||
  Rat   784 APGTFGYGCQQLCECMNNATC-DHVTG-TCYCSPGFKGIRCDQAALMMD----------ELNPYT 836

  Fly   974 ----ALNRSQN------------WLDIALTG--------RTEDDENCNACVCENGTSRCTNLWCG 1014
                ||...::            :|.:.|.|        :.|...:....|......|.|:    
  Rat   837 KISPALGAERHSVGAVTGIILLLFLVVVLLGLFAWRRRRQKEKGRDLAPRVSYTPAMRMTS---- 897

  Fly  1015 LPNCYKVDPLSKSSNLSGVCKQHEVCVPALSETCLSSPCNVRGDCRALEPSRRVAPPRLPAKS-- 1077
              ..|.:..||:||:       |..|....|...|:...........|:   |.:|.:|..||  
  Rat   898 --TDYSLSDLSQSSS-------HAQCFSNASYHTLACGGPATSQASTLD---RNSPTKLSNKSLD 950

  Fly  1078 ---SCWPNQAVVN--ENCARLTIL----------LALERVGKGASVE--GLCSLVRVLLAAQLIK 1125
               :.|...:.||  ::..:::.|          :.|..:.:.|...  |.|.:.|         
  Rat   951 RDTAGWTPYSYVNVLDSHFQISALEARYPPEDFYIELRHLSRHAEPHSPGTCGMDR--------- 1006

  Fly  1126 KPASTFGQDPGMLMVLCDLKTGTNDTVELTVSSS---KLNDPQLPVAVGLLGELLSFR--QLNGI 1185
             ..:|:..|.|.           .|.::.:|.||   .||..:.|.|......:|:.:  :.:.:
  Rat  1007 -RQNTYIMDKGF-----------KDYMKESVCSSSTCSLNSSENPYATIKDPPILTCKLPESSYV 1059

  Fly  1186 QRRKELEL--QHAKLAALT----SIVEVKLETARVADGSGHS 1221
            :.:..:.:  .:..:.:|:    :|.||:...:.|.:|.||:
  Rat  1060 EMKSPVHMGSPYTDVPSLSTSNKNIYEVEPTVSVVQEGRGHN 1101

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SerNP_001287558.1 MNNL 83..161 CDD:284966
DSL 220..282 CDD:279722 19/54 (35%)
EGF_CA 350..388 CDD:238011 11/43 (26%)
EGF_CA 490..526 CDD:238011 11/45 (24%)
EGF_CA 610..645 CDD:238011 13/34 (38%)
EGF_CA 647..683 CDD:238011 8/42 (19%)
EGF_CA 798..833 CDD:238011 15/34 (44%)
EGF_CA 879..913 CDD:238011 12/43 (28%)
EGF_CA 916..952 CDD:238011 14/45 (31%)
VWC_out <993..1053 CDD:214565 12/59 (20%)
Megf11XP_038938374.1 EMI 26..93 CDD:400092 7/16 (44%)
EGF_CA 189..234 CDD:419698 13/44 (30%)
Laminin_EGF 275..320 CDD:395007 15/48 (31%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.910

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